52 items (Dendroctonus ponderosae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D910_08273	Uncharacterized protein. (116 aa)
	D910_06928	RING-type domain-containing protein. (313 aa)
	D910_03171	Uncharacterized protein. (59 aa)
	D910_08322	Spt4 domain-containing protein. (116 aa)
	D910_04274	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (506 aa)
	D910_08713	Skp1_POZ domain-containing protein; Belongs to the SKP1 family. (118 aa)
	D910_09826	RPOLD domain-containing protein. (275 aa)
	D910_10131	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity. (265 aa)
	D910_11732	Ubiquitin-like domain-containing protein. (117 aa)
	D910_00307	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (130 aa)
	D910_09068	Uncharacterized protein. (210 aa)
	D910_06163	CYCLIN domain-containing protein; Belongs to the cyclin family. (1227 aa)
	D910_08217	CYCLIN domain-containing protein; Belongs to the cyclin family. (328 aa)
	D910_00756	Uncharacterized protein; Belongs to the cyclin family. (380 aa)
	D910_04882	Uncharacterized protein. (1054 aa)
	D910_00956	Cyclin N-terminal domain-containing protein. (727 aa)
	D910_11757	Uncharacterized protein. (271 aa)
	D910_11758	Uncharacterized protein. (381 aa)
	D910_10289	TFIIS N-terminal domain-containing protein. (227 aa)
	D910_12589	TPR_REGION domain-containing protein. (1134 aa)
	D910_09929	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (475 aa)
	D910_09003	Uncharacterized protein. (300 aa)
	D910_12741	Transcription elongation factor SPT5. (1058 aa)
	D910_11379	Uncharacterized protein. (723 aa)
	D910_08047	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (204 aa)
	D910_11264	Uncharacterized protein. (532 aa)
	D910_07520	ELL domain-containing protein. (349 aa)
	D910_08035	Uncharacterized protein. (589 aa)
	D910_04755	Uncharacterized protein. (1146 aa)
	D910_01209	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1429 aa)
	D910_05244	EAF domain-containing protein. (348 aa)
	D910_06957	Helicase ATP-binding domain-containing protein. (738 aa)
	D910_06095	Uncharacterized protein. (617 aa)
	D910_03404	Uncharacterized protein. (459 aa)
	D910_03063	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1871 aa)
	D910_06231	RNA_pol_L_2 domain-containing protein. (72 aa)
	D910_04420	AHD domain-containing protein. (729 aa)
	D910_02271	SHS2_Rpb7-N domain-containing protein. (94 aa)
	D910_00777	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family. (1699 aa)
	D910_06656	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (339 aa)
	D910_03826	WD_REPEATS_REGION domain-containing protein. (281 aa)
	D910_04894	Uncharacterized protein. (624 aa)
	D910_07648	RRM domain-containing protein. (271 aa)
	D910_06963	Helicase ATP-binding domain-containing protein. (762 aa)
	D910_10215	Plus3 domain-containing protein. (736 aa)
	D910_10835	Uncharacterized protein. (1133 aa)
	D910_02368	HDAg domain-containing protein. (593 aa)
	D910_09350	Uncharacterized protein. (520 aa)
	D910_09133	Uncharacterized protein. (1121 aa)
	D910_10461	Uncharacterized protein. (241 aa)
	D910_06473	Uncharacterized protein. (131 aa)
	D910_12618	General transcription factor IIH subunit. (395 aa)

Your Current Organism:

Dendroctonus ponderosae

NCBI taxonomy Id: 77166
Other names: D. ponderosae, mountain pine beetle

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D910_00307	D910_00756	J3JUM6	U4UCH6	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Uncharacterized protein; Belongs to the cyclin family.	0.683
D910_00307	D910_00777	J3JUM6	U4TUM8	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family.	0.915
D910_00307	D910_00956	J3JUM6	U4V0A7	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Cyclin N-terminal domain-containing protein.	0.596
D910_00307	D910_01209	J3JUM6	U4UBL6	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
D910_00307	D910_02271	J3JUM6	U4TVQ3	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	SHS2_Rpb7-N domain-containing protein.	0.999
D910_00307	D910_02368	J3JUM6	N6U3R5	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	HDAg domain-containing protein.	0.925
D910_00307	D910_03063	J3JUM6	U4U4W4	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
D910_00307	D910_03171	J3JUM6	N6TSR1	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Uncharacterized protein.	0.999
D910_00307	D910_03404	J3JUM6	U4U7R8	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Uncharacterized protein.	0.883
D910_00307	D910_03826	J3JUM6	N6UKW9	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	WD_REPEATS_REGION domain-containing protein.	0.627
D910_00307	D910_04274	J3JUM6	N6T4W4	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.996
D910_00307	D910_04420	J3JUM6	U4U3W3	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	AHD domain-containing protein.	0.738
D910_00307	D910_04755	J3JUM6	U4UBP8	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Uncharacterized protein.	0.981
D910_00307	D910_04882	J3JUM6	U4UC13	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Uncharacterized protein.	0.896
D910_00307	D910_04894	J3JUM6	N6UGB4	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Uncharacterized protein.	0.887
D910_00307	D910_05244	J3JUM6	U4UBA0	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	EAF domain-containing protein.	0.891
D910_00307	D910_06095	J3JUM6	U4U8N1	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Uncharacterized protein.	0.909
D910_00307	D910_06163	J3JUM6	U4UDW2	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	CYCLIN domain-containing protein; Belongs to the cyclin family.	0.596
D910_00307	D910_06231	J3JUM6	U4U4Q0	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	RNA_pol_L_2 domain-containing protein.	0.999
D910_00307	D910_06473	J3JUM6	J3JU72	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Uncharacterized protein.	0.999