17 items (Dendroctonus ponderosae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D910_04551	Uncharacterized protein. (1503 aa)
	D910_04570	Myotubularin phosphatase domain-containing protein. (637 aa)
	D910_04760	PH domain-containing protein. (257 aa)
	D910_06348	FYVE-type domain-containing protein. (205 aa)
	D910_11604	Uncharacterized protein. (389 aa)
	D910_09199	SAC domain-containing protein. (766 aa)
	D910_09587	Uncharacterized protein. (941 aa)
	D910_11606	Uncharacterized protein. (393 aa)
	D910_11708	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (2794 aa)
	D910_05061	Phosphatidylinositol 3-kinase catalytic subunit type 3. (885 aa)
	D910_04762	Uncharacterized protein. (850 aa)
	D910_00992	PIPK domain-containing protein. (1029 aa)
	D910_02229	Myotubularin phosphatase domain-containing protein. (420 aa)
	D910_05030	Uncharacterized protein. (1698 aa)
	D910_03144	PI3K/PI4K domain-containing protein. (559 aa)
	D910_06349	Uncharacterized protein. (684 aa)
	D910_04724	Uncharacterized protein. (356 aa)

Your Current Organism:

Dendroctonus ponderosae

NCBI taxonomy Id: 77166
Other names: D. ponderosae, mountain pine beetle

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D910_00992	D910_03144	U4TZX3	N6UGL3	PIPK domain-containing protein.	PI3K/PI4K domain-containing protein.	0.915
D910_00992	D910_05030	U4TZX3	N6UJN0	PIPK domain-containing protein.	Uncharacterized protein.	0.900
D910_00992	D910_05061	U4TZX3	U4UAN3	PIPK domain-containing protein.	Phosphatidylinositol 3-kinase catalytic subunit type 3.	0.482
D910_00992	D910_06349	U4TZX3	N6UFA4	PIPK domain-containing protein.	Uncharacterized protein.	0.906
D910_00992	D910_09199	U4TZX3	U4UPD3	PIPK domain-containing protein.	SAC domain-containing protein.	0.925
D910_00992	D910_09587	U4TZX3	U4UQF3	PIPK domain-containing protein.	Uncharacterized protein.	0.915
D910_00992	D910_11604	U4TZX3	U4UPB0	PIPK domain-containing protein.	Uncharacterized protein.	0.940
D910_00992	D910_11606	U4TZX3	U4UVT5	PIPK domain-containing protein.	Uncharacterized protein.	0.937
D910_02229	D910_04570	U4TTF0	U4UB35	Myotubularin phosphatase domain-containing protein.	Myotubularin phosphatase domain-containing protein.	0.893
D910_02229	D910_05061	U4TTF0	U4UAN3	Myotubularin phosphatase domain-containing protein.	Phosphatidylinositol 3-kinase catalytic subunit type 3.	0.585
D910_02229	D910_09199	U4TTF0	U4UPD3	Myotubularin phosphatase domain-containing protein.	SAC domain-containing protein.	0.584
D910_02229	D910_11708	U4TTF0	U4UVZ9	Myotubularin phosphatase domain-containing protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.649
D910_03144	D910_00992	N6UGL3	U4TZX3	PI3K/PI4K domain-containing protein.	PIPK domain-containing protein.	0.915
D910_03144	D910_05030	N6UGL3	N6UJN0	PI3K/PI4K domain-containing protein.	Uncharacterized protein.	0.900
D910_03144	D910_06349	N6UGL3	N6UFA4	PI3K/PI4K domain-containing protein.	Uncharacterized protein.	0.901
D910_04551	D910_05061	U4U953	U4UAN3	Uncharacterized protein.	Phosphatidylinositol 3-kinase catalytic subunit type 3.	0.999
D910_04551	D910_11708	U4U953	U4UVZ9	Uncharacterized protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.722
D910_04570	D910_02229	U4UB35	U4TTF0	Myotubularin phosphatase domain-containing protein.	Myotubularin phosphatase domain-containing protein.	0.893
D910_04570	D910_06348	U4UB35	U4UGF2	Myotubularin phosphatase domain-containing protein.	FYVE-type domain-containing protein.	0.414
D910_04570	D910_06349	U4UB35	N6UFA4	Myotubularin phosphatase domain-containing protein.	Uncharacterized protein.	0.465