47 items (Dendroctonus ponderosae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D910_02376	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (799 aa)
	D910_08742	Uncharacterized protein. (212 aa)
	D910_03638	Uncharacterized protein. (220 aa)
	D910_05665	Uncharacterized protein; Belongs to the AAA ATPase family. (627 aa)
	D910_04445	Uncharacterized protein. (648 aa)
	D910_00332	Uncharacterized protein. (219 aa)
	D910_03784	Serine/threonine-protein phosphatase. (311 aa)
	D910_03335	AAA domain-containing protein; Belongs to the AAA ATPase family. (547 aa)
	D910_02594	Uncharacterized protein. (1781 aa)
	D910_12128	Uncharacterized protein. (323 aa)
	D910_02628	JmjC domain-containing protein. (235 aa)
	D910_11633	Uncharacterized protein; Belongs to the AAA ATPase family. (437 aa)
	D910_02013	Uncharacterized protein. (426 aa)
	D910_07828	C2H2-type domain-containing protein. (90 aa)
	D910_06704	Uncharacterized protein. (90 aa)
	D910_03681	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family. (215 aa)
	D910_06672	WD_REPEATS_REGION domain-containing protein. (328 aa)
	D910_00680	Nuclear pore protein. (605 aa)
	D910_02124	Uncharacterized protein. (212 aa)
	D910_00402	Nuclear pore protein. (600 aa)
	D910_02099	WD_REPEATS_REGION domain-containing protein. (148 aa)
	D910_00654	Uncharacterized protein; Belongs to the cyclin family. (364 aa)
	D910_01208	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (446 aa)
	D910_02161	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (333 aa)
	D910_03211	Uncharacterized protein. (1896 aa)
	D910_03301	Uncharacterized protein. (1335 aa)
	D910_03553	Uncharacterized protein. (1066 aa)
	D910_08125	Uncharacterized protein. (712 aa)
	D910_04446	Uncharacterized protein. (716 aa)
	D910_06834	RanGAP1_C domain-containing protein. (559 aa)
	D910_05390	Uncharacterized protein. (250 aa)
	D910_05812	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (625 aa)
	D910_08990	Uncharacterized protein. (726 aa)
	D910_10351	Uncharacterized protein. (138 aa)
	D910_07535	Nuclear pore protein. (818 aa)
	D910_09965	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family. (697 aa)
	D910_10100	Uncharacterized protein. (365 aa)
	D910_09757	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (338 aa)
	D910_08250	ATPase_AAA_core domain-containing protein. (909 aa)
	D910_11638	Uncharacterized protein. (1094 aa)
	D910_12711	Peptidase S59 domain-containing protein. (1556 aa)
	D910_08870	RRM Nup35-type domain-containing protein. (280 aa)
	D910_09730	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family. (331 aa)
	D910_12087	Uncharacterized protein. (179 aa)
	D910_11162	Uncharacterized protein. (427 aa)
	D910_11432	Uncharacterized protein. (588 aa)
	D910_11728	Uncharacterized protein. (606 aa)

Your Current Organism:

Dendroctonus ponderosae

NCBI taxonomy Id: 77166
Other names: D. ponderosae, mountain pine beetle

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D910_00332	D910_02124	N6TGA5	U4TT48	Uncharacterized protein.	Uncharacterized protein.	0.987
D910_00332	D910_03335	N6TGA5	N6TJE9	Uncharacterized protein.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.788
D910_00332	D910_03638	N6TGA5	J3JXU3	Uncharacterized protein.	Uncharacterized protein.	0.997
D910_00332	D910_05390	N6TGA5	U4UBM3	Uncharacterized protein.	Uncharacterized protein.	0.997
D910_00332	D910_05665	N6TGA5	N6SRM3	Uncharacterized protein.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.788
D910_00332	D910_08125	N6TGA5	U4UA12	Uncharacterized protein.	Uncharacterized protein.	0.771
D910_00332	D910_08250	N6TGA5	U4ULN2	Uncharacterized protein.	ATPase_AAA_core domain-containing protein.	0.706
D910_00332	D910_08742	N6TGA5	J3JT77	Uncharacterized protein.	Uncharacterized protein.	0.888
D910_00332	D910_10100	N6TGA5	U4UIE7	Uncharacterized protein.	Uncharacterized protein.	0.955
D910_00332	D910_11162	N6TGA5	U4UUL4	Uncharacterized protein.	Uncharacterized protein.	0.966
D910_00332	D910_11633	N6TGA5	N6TV25	Uncharacterized protein.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.890
D910_00332	D910_11638	N6TGA5	U4UMM7	Uncharacterized protein.	Uncharacterized protein.	0.706
D910_00402	D910_02099	U4TU36	U4TV50	Nuclear pore protein.	WD_REPEATS_REGION domain-containing protein.	0.901
D910_00402	D910_02376	U4TU36	N6U148	Nuclear pore protein.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.953
D910_00402	D910_02594	U4TU36	N6TL82	Nuclear pore protein.	Uncharacterized protein.	0.949
D910_00402	D910_03211	U4TU36	U4U5C3	Nuclear pore protein.	Uncharacterized protein.	0.923
D910_00402	D910_03301	U4TU36	U4U5L9	Nuclear pore protein.	Uncharacterized protein.	0.939
D910_00402	D910_03553	U4TU36	U4U868	Nuclear pore protein.	Uncharacterized protein.	0.934
D910_00402	D910_03681	U4TU36	N6UBX8	Nuclear pore protein.	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	0.504
D910_00402	D910_04445	U4TU36	N6TDE6	Nuclear pore protein.	Uncharacterized protein.	0.752