87 items (Dendroctonus ponderosae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D910_07289	Tim44 domain-containing protein. (325 aa)
	D910_06759	Ribosomal_S10 domain-containing protein. (324 aa)
	D910_03646	Uncharacterized protein. (111 aa)
	D910_07009	Uncharacterized protein. (423 aa)
	D910_01661	MRP-S28 domain-containing protein. (317 aa)
	D910_03763	Uncharacterized protein. (325 aa)
	D910_07788	Ribosomal_L16 domain-containing protein. (184 aa)
	D910_06421	Uncharacterized protein. (106 aa)
	D910_04594	Uncharacterized protein. (547 aa)
	D910_07989	Uncharacterized protein. (235 aa)
	D910_05006	Tr-type G domain-containing protein. (589 aa)
	D910_06127	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family. (426 aa)
	D910_10287	RRF domain-containing protein. (158 aa)
	D910_07186	Uncharacterized protein. (264 aa)
	D910_06726	Uncharacterized protein. (162 aa)
	D910_09187	RF_PROK_I domain-containing protein. (400 aa)
	D910_05335	Uncharacterized protein. (330 aa)
	D910_04381	Uncharacterized protein. (140 aa)
	D910_05895	Uncharacterized protein. (366 aa)
	D910_03766	Uncharacterized protein. (75 aa)
	D910_05262	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family. (97 aa)
	D910_05158	Uncharacterized protein. (403 aa)
	D910_05005	Uncharacterized protein. (199 aa)
	D910_03705	Uncharacterized protein. (219 aa)
	D910_00918	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. (699 aa)
	D910_11060	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family. (212 aa)
	D910_07027	Uncharacterized protein. (105 aa)
	D910_01218	Uncharacterized protein. (201 aa)
	D910_06116	Uncharacterized protein. (405 aa)
	D910_09944	Uncharacterized protein. (131 aa)
	D910_03627	Uncharacterized protein. (238 aa)
	D910_09140	Uncharacterized protein. (125 aa)
	D910_05844	Uncharacterized protein. (113 aa)
	D910_08886	Ribosomal_L18e/L15P domain-containing protein. (289 aa)
	D910_06118	Tr-type G domain-containing protein. (406 aa)
	D910_08587	Uncharacterized protein. (284 aa)
	D910_03343	Uncharacterized protein. (165 aa)
	D910_07789	Uncharacterized protein. (64 aa)
	D910_06989	Uncharacterized protein. (334 aa)
	D910_05823	Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (472 aa)
	D910_05964	Uncharacterized protein. (150 aa)
	D910_03510	Elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. (309 aa)
	D910_08020	Uncharacterized protein. (117 aa)
	D910_05697	Uncharacterized protein. (254 aa)
	D910_07859	Uncharacterized protein. (503 aa)
	D910_11755	Uncharacterized protein. (426 aa)
	D910_04795	RF_PROK_I domain-containing protein. (201 aa)
	D910_04881	Uncharacterized protein. (159 aa)
	D910_07593	Uncharacterized protein. (184 aa)
	D910_06134	Uncharacterized protein. (329 aa)
	D910_08866	Uncharacterized protein. (256 aa)
	D910_04532	Tr-type G domain-containing protein. (749 aa)
	D910_02008	Uncharacterized protein. (131 aa)
	D910_05450	Uncharacterized protein. (160 aa)
	D910_03440	t-SNARE coiled-coil homology domain-containing protein. (546 aa)
	D910_05102	RIBOSOMAL_L9 domain-containing protein. (340 aa)
	D910_05871	Uncharacterized protein. (87 aa)
	D910_08625	Uncharacterized protein. (224 aa)
	D910_03226	Uncharacterized protein. (396 aa)
	D910_03922	Era-type G domain-containing protein. (357 aa)
	D910_06841	Uncharacterized protein. (148 aa)
	D910_05573	Uncharacterized protein. (162 aa)
	D910_03651	Uncharacterized protein. (136 aa)
	D910_03941	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family. (195 aa)
	D910_09990	Uncharacterized protein. (178 aa)
	D910_03970	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family. (166 aa)
	D910_07093	Ribosomal_S7 domain-containing protein. (233 aa)
	D910_06969	Uncharacterized protein. (202 aa)
	D910_06245	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL20 family. (153 aa)
	D910_02960	KOW domain-containing protein; Belongs to the universal ribosomal protein uL24 family. (254 aa)
	D910_01073	Uncharacterized protein. (366 aa)
	D910_00757	L51_S25_CI-B8 domain-containing protein. (183 aa)
	D910_08892	Uncharacterized protein. (165 aa)
	D910_10024	CHCH domain-containing protein. (120 aa)
	D910_01337	Uncharacterized protein. (182 aa)
	D910_02360	Nudix hydrolase domain-containing protein. (259 aa)
	D910_07230	Uncharacterized protein. (357 aa)
	D910_02362	Uncharacterized protein. (179 aa)
	D910_03307	Uncharacterized protein. (200 aa)
	D910_09737	Tr-type G domain-containing protein. (663 aa)
	D910_01081	Uncharacterized protein. (142 aa)
	D910_11791	Uncharacterized protein. (292 aa)
	D910_11790	Ribosomal_S10 domain-containing protein. (174 aa)
	D910_12265	Uncharacterized protein. (392 aa)
	D910_10893	Uncharacterized protein; Belongs to the universal ribosomal protein uS15 family. (271 aa)
	D910_11323	Ribosomal_L2_C domain-containing protein. (304 aa)
	D910_00693	Uncharacterized protein. (222 aa)

Your Current Organism:

Dendroctonus ponderosae

NCBI taxonomy Id: 77166
Other names: D. ponderosae, mountain pine beetle

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D910_00693	D910_00757	U4UZW2	J3JWQ8	Uncharacterized protein.	L51_S25_CI-B8 domain-containing protein.	0.876
D910_00693	D910_00918	U4UZW2	U4TQI2	Uncharacterized protein.	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.	0.873
D910_00693	D910_01073	U4UZW2	J3JWX1	Uncharacterized protein.	Uncharacterized protein.	0.956
D910_00693	D910_01081	U4UZW2	U4UJZ8	Uncharacterized protein.	Uncharacterized protein.	0.882
D910_00693	D910_01218	U4UZW2	N6UP60	Uncharacterized protein.	Uncharacterized protein.	0.988
D910_00693	D910_01337	U4UZW2	J3JWG2	Uncharacterized protein.	Uncharacterized protein.	0.719
D910_00693	D910_01661	U4UZW2	U4U7S8	Uncharacterized protein.	MRP-S28 domain-containing protein.	0.947
D910_00693	D910_02008	U4UZW2	N6TH19	Uncharacterized protein.	Uncharacterized protein.	0.744
D910_00693	D910_02360	U4UZW2	J3JW99	Uncharacterized protein.	Nudix hydrolase domain-containing protein.	0.913
D910_00693	D910_02362	U4UZW2	J3JU30	Uncharacterized protein.	Uncharacterized protein.	0.921
D910_00693	D910_02960	U4UZW2	J3JX16	Uncharacterized protein.	KOW domain-containing protein; Belongs to the universal ribosomal protein uL24 family.	0.959
D910_00693	D910_03226	U4UZW2	N6T4X9	Uncharacterized protein.	Uncharacterized protein.	0.982
D910_00693	D910_03307	U4UZW2	J3JTS2	Uncharacterized protein.	Uncharacterized protein.	0.841
D910_00693	D910_03343	U4UZW2	N6UBH7	Uncharacterized protein.	Uncharacterized protein.	0.729
D910_00693	D910_03440	U4UZW2	N6TE21	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein.	0.988
D910_00693	D910_03510	U4UZW2	N6TZU7	Uncharacterized protein.	Elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome.	0.900
D910_00693	D910_03627	U4UZW2	N6UJA4	Uncharacterized protein.	Uncharacterized protein.	0.858
D910_00693	D910_03646	U4UZW2	U4U6I8	Uncharacterized protein.	Uncharacterized protein.	0.865
D910_00693	D910_03651	U4UZW2	N6SSX8	Uncharacterized protein.	Uncharacterized protein.	0.971
D910_00693	D910_03705	U4UZW2	U4TZP2	Uncharacterized protein.	Uncharacterized protein.	0.985