STRINGSTRING
D910_02476 D910_02476 D910_00956 D910_00956 D910_00639 D910_00639 D910_00325 D910_00325 D910_11757 D910_11757 D910_11758 D910_11758 D910_10977 D910_10977 D910_10289 D910_10289 D910_01681 D910_01681 D910_12589 D910_12589 D910_09929 D910_09929 D910_09003 D910_09003 D910_12741 D910_12741 D910_11379 D910_11379 D910_08047 D910_08047 D910_11264 D910_11264 D910_09620 D910_09620 D910_07520 D910_07520 D910_09133 D910_09133 D910_10461 D910_10461 D910_08858 D910_08858 D910_06163 D910_06163 D910_08217 D910_08217 D910_09026 D910_09026 D910_00756 D910_00756 D910_04882 D910_04882 D910_04755 D910_04755 D910_01209 D910_01209 D910_05244 D910_05244 D910_08061 D910_08061 D910_06957 D910_06957 D910_06095 D910_06095 D910_03404 D910_03404 D910_00754 D910_00754 D910_05316 D910_05316 D910_03141 D910_03141 D910_03063 D910_03063 D910_06231 D910_06231 D910_05300 D910_05300 D910_04420 D910_04420 D910_04405 D910_04405 D910_00378 D910_00378 D910_02271 D910_02271 D910_00777 D910_00777 D910_00500 D910_00500 D910_01298 D910_01298 D910_01240 D910_01240 D910_00925 D910_00925 D910_01211 D910_01211 D910_00753 D910_00753 D910_06656 D910_06656 D910_03826 D910_03826 D910_04894 D910_04894 D910_07648 D910_07648 D910_06963 D910_06963 D910_10215 D910_10215 D910_10835 D910_10835 D910_02368 D910_02368 D910_02732 D910_02732 D910_09350 D910_09350 D910_09027 D910_09027 D910_11518 D910_11518 D910_10601 D910_10601 D910_07420 D910_07420 D910_08035 D910_08035 D910_08273 D910_08273 D910_06928 D910_06928 D910_03171 D910_03171 D910_11062 D910_11062 D910_04566 D910_04566 D910_08322 D910_08322 D910_04274 D910_04274 D910_08311 D910_08311 D910_08713 D910_08713 D910_12183 D910_12183 D910_09826 D910_09826 D910_10131 D910_10131 D910_00238 D910_00238 D910_06732 D910_06732 D910_11732 D910_11732 D910_00307 D910_00307 D910_09076 D910_09076 D910_04161 D910_04161 D910_09068 D910_09068 D910_01956 D910_01956 D910_06473 D910_06473 D910_12618 D910_12618
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
D910_02476Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (292 aa)
D910_00956Cyclin N-terminal domain-containing protein. (727 aa)
D910_00639Peptidase_M1 domain-containing protein. (202 aa)
D910_00325Uncharacterized protein. (149 aa)
D910_11757Uncharacterized protein. (271 aa)
D910_11758Uncharacterized protein. (381 aa)
D910_10977TFIID_20kDa domain-containing protein. (231 aa)
D910_10289TFIIS N-terminal domain-containing protein. (227 aa)
D910_01681Uncharacterized protein. (159 aa)
D910_12589TPR_REGION domain-containing protein. (1134 aa)
D910_09929General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (475 aa)
D910_09003Uncharacterized protein. (300 aa)
D910_12741Transcription elongation factor SPT5. (1058 aa)
D910_11379Uncharacterized protein. (723 aa)
D910_08047Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (204 aa)
D910_11264Uncharacterized protein. (532 aa)
D910_09620DUF2236 domain-containing protein. (331 aa)
D910_07520ELL domain-containing protein. (349 aa)
D910_09133Uncharacterized protein. (1121 aa)
D910_10461Uncharacterized protein. (241 aa)
D910_08858WD_REPEATS_REGION domain-containing protein. (629 aa)
D910_06163CYCLIN domain-containing protein; Belongs to the cyclin family. (1227 aa)
D910_08217CYCLIN domain-containing protein; Belongs to the cyclin family. (328 aa)
D910_09026Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary microRNAs (miRNAs) processing. Also involved in innate immunity via the short interfering RNAs (siRNAs) processing machinery by restricting the viral RNA production. In the CBC complex, Cbp20 recognizes and binds capped RNAs (m7GpppG-capped RNA) but requ [...] (111 aa)
D910_00756Uncharacterized protein; Belongs to the cyclin family. (380 aa)
D910_04882Uncharacterized protein. (1054 aa)
D910_04755Uncharacterized protein. (1146 aa)
D910_01209DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1429 aa)
D910_05244EAF domain-containing protein. (348 aa)
D910_08061HTH TFE/IIEalpha-type domain-containing protein. (404 aa)
D910_06957Helicase ATP-binding domain-containing protein. (738 aa)
D910_06095Uncharacterized protein. (617 aa)
D910_03404Uncharacterized protein. (459 aa)
D910_00754MIF4G domain-containing protein. (536 aa)
D910_05316Uncharacterized protein. (1847 aa)
D910_03141TAF6_C domain-containing protein. (293 aa)
D910_03063DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1871 aa)
D910_06231RNA_pol_L_2 domain-containing protein. (72 aa)
D910_05300TAFII55_N domain-containing protein. (290 aa)
D910_04420AHD domain-containing protein. (729 aa)
D910_04405TAF domain-containing protein. (617 aa)
D910_00378Uncharacterized protein. (107 aa)
D910_02271SHS2_Rpb7-N domain-containing protein. (94 aa)
D910_00777Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family. (1699 aa)
D910_00500Uncharacterized protein. (421 aa)
D910_01298Uncharacterized protein. (673 aa)
D910_01240DUF2236 domain-containing protein. (390 aa)
D910_00925Peptidase_M1 domain-containing protein. (221 aa)
D910_01211Uncharacterized protein. (333 aa)
D910_00753MIF4G_like_2 domain-containing protein. (313 aa)
D910_06656Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (339 aa)
D910_03826WD_REPEATS_REGION domain-containing protein. (281 aa)
D910_04894Uncharacterized protein. (624 aa)
D910_07648RRM domain-containing protein. (271 aa)
D910_06963Helicase ATP-binding domain-containing protein. (762 aa)
D910_10215Plus3 domain-containing protein. (736 aa)
D910_10835Uncharacterized protein. (1133 aa)
D910_02368HDAg domain-containing protein. (593 aa)
D910_02732Uncharacterized protein. (301 aa)
D910_09350Uncharacterized protein. (520 aa)
D910_09027Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary microRNAs (miRNAs) processing. Also involved in innate immunity via the short interfering RNAs (siRNAs) processing machinery by restricting the viral RNA production. In the CBC complex, Cbp20 recognizes and binds capped RNAs (m7GpppG-capped RNA) but requ [...] (159 aa)
D910_11518Uncharacterized protein. (405 aa)
D910_10601TAFH domain-containing protein. (787 aa)
D910_07420Uncharacterized protein. (80 aa)
D910_08035Uncharacterized protein. (589 aa)
D910_08273Uncharacterized protein. (116 aa)
D910_06928RING-type domain-containing protein. (313 aa)
D910_03171Uncharacterized protein. (59 aa)
D910_11062TAFII55_N domain-containing protein. (375 aa)
D910_04566Uncharacterized protein. (128 aa)
D910_08322Spt4 domain-containing protein. (116 aa)
D910_04274Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (506 aa)
D910_08311Uncharacterized protein. (209 aa)
D910_08713Skp1_POZ domain-containing protein; Belongs to the SKP1 family. (118 aa)
D910_12183TFIIB-type domain-containing protein. (315 aa)
D910_09826RPOLD domain-containing protein. (275 aa)
D910_10131General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity. (265 aa)
D910_00238Uncharacterized protein. (234 aa)
D910_06732Uncharacterized protein. (318 aa)
D910_11732Ubiquitin-like domain-containing protein. (117 aa)
D910_00307DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (130 aa)
D910_09076Uncharacterized protein; Belongs to the cyclin family. (253 aa)
D910_04161TAFII28 domain-containing protein. (224 aa)
D910_09068Uncharacterized protein. (210 aa)
D910_01956Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (106 aa)
D910_06473Uncharacterized protein. (131 aa)
D910_12618General transcription factor IIH subunit. (395 aa)
Your Current Organism:
Dendroctonus ponderosae
NCBI taxonomy Id: 77166
Other names: D. ponderosae, mountain pine beetle
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