46 items (Dendroctonus ponderosae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D910_12618	General transcription factor IIH subunit. (395 aa)
	D910_06473	Uncharacterized protein. (131 aa)
	D910_09068	Uncharacterized protein. (210 aa)
	D910_09076	Uncharacterized protein; Belongs to the cyclin family. (253 aa)
	D910_00307	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (130 aa)
	D910_11732	Ubiquitin-like domain-containing protein. (117 aa)
	D910_10131	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity. (265 aa)
	D910_09826	RPOLD domain-containing protein. (275 aa)
	D910_08713	Skp1_POZ domain-containing protein; Belongs to the SKP1 family. (118 aa)
	D910_04274	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (506 aa)
	D910_08322	Spt4 domain-containing protein. (116 aa)
	D910_03618	Uncharacterized protein. (210 aa)
	D910_03171	Uncharacterized protein. (59 aa)
	D910_06928	RING-type domain-containing protein. (313 aa)
	D910_08273	Uncharacterized protein. (116 aa)
	D910_08035	Uncharacterized protein. (589 aa)
	D910_02368	HDAg domain-containing protein. (593 aa)
	D910_10835	Uncharacterized protein. (1133 aa)
	D910_06963	Helicase ATP-binding domain-containing protein. (762 aa)
	D910_07648	RRM domain-containing protein. (271 aa)
	D910_04894	Uncharacterized protein. (624 aa)
	D910_06656	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (339 aa)
	D910_01240	DUF2236 domain-containing protein. (390 aa)
	D910_02271	SHS2_Rpb7-N domain-containing protein. (94 aa)
	D910_03619	Uncharacterized protein. (1404 aa)
	D910_06231	RNA_pol_L_2 domain-containing protein. (72 aa)
	D910_03063	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1871 aa)
	D910_06957	Helicase ATP-binding domain-containing protein. (738 aa)
	D910_01209	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1429 aa)
	D910_04755	Uncharacterized protein. (1146 aa)
	D910_04882	Uncharacterized protein. (1054 aa)
	D910_00756	Uncharacterized protein; Belongs to the cyclin family. (380 aa)
	D910_08217	CYCLIN domain-containing protein; Belongs to the cyclin family. (328 aa)
	D910_06163	CYCLIN domain-containing protein; Belongs to the cyclin family. (1227 aa)
	D910_10461	Uncharacterized protein. (241 aa)
	D910_09133	Uncharacterized protein. (1121 aa)
	D910_07520	ELL domain-containing protein. (349 aa)
	D910_09620	DUF2236 domain-containing protein. (331 aa)
	D910_11264	Uncharacterized protein. (532 aa)
	D910_07544	Protein kinase domain-containing protein. (1257 aa)
	D910_08047	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (204 aa)
	D910_11379	Uncharacterized protein. (723 aa)
	D910_12741	Transcription elongation factor SPT5. (1058 aa)
	D910_09003	Uncharacterized protein. (300 aa)
	D910_09929	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (475 aa)
	D910_00956	Cyclin N-terminal domain-containing protein. (727 aa)

Your Current Organism:

Dendroctonus ponderosae

NCBI taxonomy Id: 77166
Other names: D. ponderosae, mountain pine beetle

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D910_00307	D910_00756	J3JUM6	U4UCH6	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Uncharacterized protein; Belongs to the cyclin family.	0.683
D910_00307	D910_00956	J3JUM6	U4V0A7	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Cyclin N-terminal domain-containing protein.	0.596
D910_00307	D910_01209	J3JUM6	U4UBL6	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
D910_00307	D910_01240	J3JUM6	U4TT73	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	DUF2236 domain-containing protein.	0.930
D910_00307	D910_02271	J3JUM6	U4TVQ3	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	SHS2_Rpb7-N domain-containing protein.	0.999
D910_00307	D910_02368	J3JUM6	N6U3R5	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	HDAg domain-containing protein.	0.925
D910_00307	D910_03063	J3JUM6	U4U4W4	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
D910_00307	D910_03171	J3JUM6	N6TSR1	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Uncharacterized protein.	0.999
D910_00307	D910_03618	J3JUM6	N6TL65	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Uncharacterized protein.	0.646
D910_00307	D910_03619	J3JUM6	U4U1L5	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Uncharacterized protein.	0.646
D910_00307	D910_04274	J3JUM6	N6T4W4	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.996
D910_00307	D910_04755	J3JUM6	U4UBP8	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Uncharacterized protein.	0.981
D910_00307	D910_04882	J3JUM6	U4UC13	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Uncharacterized protein.	0.896
D910_00307	D910_04894	J3JUM6	N6UGB4	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Uncharacterized protein.	0.887
D910_00307	D910_06163	J3JUM6	U4UDW2	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	CYCLIN domain-containing protein; Belongs to the cyclin family.	0.596
D910_00307	D910_06231	J3JUM6	U4U4Q0	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	RNA_pol_L_2 domain-containing protein.	0.999
D910_00307	D910_06473	J3JUM6	J3JU72	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Uncharacterized protein.	0.999
D910_00307	D910_06656	J3JUM6	N6UM52	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.775
D910_00307	D910_06928	J3JUM6	N6TT49	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	RING-type domain-containing protein.	0.978
D910_00307	D910_06957	J3JUM6	U4U951	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Helicase ATP-binding domain-containing protein.	0.915