48 items (Dendroctonus ponderosae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D910_00398	RING-type domain-containing protein. (229 aa)
	D910_10258	P66_CC domain-containing protein. (574 aa)
	D910_10583	Uncharacterized protein. (1481 aa)
	D910_11080	Uncharacterized protein. (152 aa)
	D910_09354	WD_REPEATS_REGION domain-containing protein. (719 aa)
	D910_07272	Uncharacterized protein. (239 aa)
	D910_08071	VEFS-Box domain-containing protein. (670 aa)
	D910_06169	MamL-1 domain-containing protein. (1016 aa)
	D910_06051	Uncharacterized protein. (536 aa)
	D910_05780	Uncharacterized protein. (174 aa)
	D910_01656	Uncharacterized protein. (92 aa)
	D910_01545	RING-type domain-containing protein. (229 aa)
	D910_03650	WD_REPEATS_REGION domain-containing protein. (1270 aa)
	D910_07339	Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family. (2421 aa)
	D910_09569	Uncharacterized protein. (320 aa)
	D910_07089	Thioredoxin domain-containing protein. (675 aa)
	D910_03777	Uncharacterized protein. (414 aa)
	D910_07130	Uncharacterized protein. (279 aa)
	D910_10095	Uncharacterized protein. (280 aa)
	D910_10551	Uncharacterized protein. (389 aa)
	D910_01790	Uncharacterized protein. (124 aa)
	D910_06523	Uncharacterized protein. (305 aa)
	D910_09851	Chromo domain-containing protein. (300 aa)
	D910_05409	Uncharacterized protein. (413 aa)
	D910_12218	Uncharacterized protein. (183 aa)
	D910_05410	Uncharacterized protein. (190 aa)
	D910_03350	Uncharacterized protein. (60 aa)
	D910_03142	Uncharacterized protein. (235 aa)
	D910_01900	SAM domain-containing protein. (517 aa)
	D910_02723	Uncharacterized protein. (1286 aa)
	D910_02724	Uncharacterized protein. (80 aa)
	D910_04105	WD_REPEATS_REGION domain-containing protein. (433 aa)
	D910_06851	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (473 aa)
	D910_03783	Uncharacterized protein. (323 aa)
	D910_05810	Robl_LC7 domain-containing protein. (125 aa)
	D910_02808	Uncharacterized protein. (90 aa)
	D910_12717	Aa_trans domain-containing protein. (378 aa)
	D910_12355	Uncharacterized protein. (1292 aa)
	D910_12356	Uncharacterized protein. (634 aa)
	D910_10503	Uncharacterized protein. (594 aa)
	D910_01146	Uncharacterized protein. (986 aa)
	D910_00622	Uncharacterized protein. (563 aa)
	D910_10093	Uncharacterized protein. (461 aa)
	D910_09501	Uncharacterized protein. (481 aa)
	D910_12297	RING-type domain-containing protein. (102 aa)
	D910_12619	Helicase C-terminal domain-containing protein. (1602 aa)
	D910_12299	RAWUL domain-containing protein. (195 aa)
	D910_08452	Uncharacterized protein. (190 aa)

Your Current Organism:

Dendroctonus ponderosae

NCBI taxonomy Id: 77166
Other names: D. ponderosae, mountain pine beetle

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D910_00398	D910_00622	U4TPR4	U4US47	RING-type domain-containing protein.	Uncharacterized protein.	0.526
D910_00398	D910_01656	U4TPR4	U4U2P3	RING-type domain-containing protein.	Uncharacterized protein.	0.884
D910_00398	D910_01900	U4TPR4	U4TSI4	RING-type domain-containing protein.	SAM domain-containing protein.	0.866
D910_00398	D910_04105	U4TPR4	J3JTN9	RING-type domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.688
D910_00398	D910_07130	U4TPR4	N6TFD7	RING-type domain-containing protein.	Uncharacterized protein.	0.885
D910_00398	D910_08071	U4TPR4	U4U9W0	RING-type domain-containing protein.	VEFS-Box domain-containing protein.	0.700
D910_00398	D910_09354	U4TPR4	U4UG71	RING-type domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.775
D910_00398	D910_09851	U4TPR4	N6U9V7	RING-type domain-containing protein.	Chromo domain-containing protein.	0.885
D910_00398	D910_10093	U4TPR4	U4URS9	RING-type domain-containing protein.	Uncharacterized protein.	0.716
D910_00398	D910_10095	U4TPR4	N6THS6	RING-type domain-containing protein.	Uncharacterized protein.	0.716
D910_00398	D910_10503	U4TPR4	U4USQ3	RING-type domain-containing protein.	Uncharacterized protein.	0.526
D910_00398	D910_10583	U4TPR4	U4UJJ7	RING-type domain-containing protein.	Uncharacterized protein.	0.765
D910_00398	D910_12297	U4TPR4	U4UPI6	RING-type domain-containing protein.	RING-type domain-containing protein.	0.827
D910_00398	D910_12299	U4TPR4	U4ULS4	RING-type domain-containing protein.	RAWUL domain-containing protein.	0.827
D910_00622	D910_00398	U4US47	U4TPR4	Uncharacterized protein.	RING-type domain-containing protein.	0.526
D910_00622	D910_01545	U4US47	U4U0Q5	Uncharacterized protein.	RING-type domain-containing protein.	0.526
D910_00622	D910_01656	U4US47	U4U2P3	Uncharacterized protein.	Uncharacterized protein.	0.688
D910_00622	D910_01900	U4US47	U4TSI4	Uncharacterized protein.	SAM domain-containing protein.	0.824
D910_00622	D910_07130	U4US47	N6TFD7	Uncharacterized protein.	Uncharacterized protein.	0.637
D910_00622	D910_09354	U4US47	U4UG71	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.463