14 items (Dendroctonus ponderosae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D910_12017	Vitellogenin domain-containing protein. (1214 aa)
	D910_12720	Uncharacterized protein. (3302 aa)
	D910_12020	Uncharacterized protein. (358 aa)
	D910_12802	Vitellogenin domain-containing protein. (741 aa)
	D910_12801	Uncharacterized protein. (1772 aa)
	D910_12491	Uncharacterized protein. (239 aa)
	D910_12490	SSD domain-containing protein. (336 aa)
	D910_05476	Uncharacterized protein. (377 aa)
	D910_05475	SSD domain-containing protein. (455 aa)
	D910_10575	Uncharacterized protein. (255 aa)
	D910_12018	Uncharacterized protein. (258 aa)
	D910_10574	Uncharacterized protein. (114 aa)
	D910_00264	Uncharacterized protein. (215 aa)
	D910_12803	VWFD domain-containing protein. (732 aa)

Your Current Organism:

Dendroctonus ponderosae

NCBI taxonomy Id: 77166
Other names: D. ponderosae, mountain pine beetle

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D910_00264	D910_05475	U4UNV8	U4UBV5	Uncharacterized protein.	SSD domain-containing protein.	0.772
D910_00264	D910_05476	U4UNV8	U4U4T5	Uncharacterized protein.	Uncharacterized protein.	0.728
D910_05475	D910_00264	U4UBV5	U4UNV8	SSD domain-containing protein.	Uncharacterized protein.	0.772
D910_05475	D910_05476	U4UBV5	U4U4T5	SSD domain-containing protein.	Uncharacterized protein.	0.940
D910_05476	D910_00264	U4U4T5	U4UNV8	Uncharacterized protein.	Uncharacterized protein.	0.728
D910_05476	D910_05475	U4U4T5	U4UBV5	Uncharacterized protein.	SSD domain-containing protein.	0.940
D910_10574	D910_10575	U4UL98	U4UH13	Uncharacterized protein.	Uncharacterized protein.	0.887
D910_10575	D910_10574	U4UH13	U4UL98	Uncharacterized protein.	Uncharacterized protein.	0.887
D910_12017	D910_12018	U4UQE3	U4UKZ5	Vitellogenin domain-containing protein.	Uncharacterized protein.	0.851
D910_12017	D910_12020	U4UQE3	U4UWR0	Vitellogenin domain-containing protein.	Uncharacterized protein.	0.919
D910_12018	D910_12017	U4UKZ5	U4UQE3	Uncharacterized protein.	Vitellogenin domain-containing protein.	0.851
D910_12018	D910_12020	U4UKZ5	U4UWR0	Uncharacterized protein.	Uncharacterized protein.	0.842
D910_12020	D910_12017	U4UWR0	U4UQE3	Uncharacterized protein.	Vitellogenin domain-containing protein.	0.919
D910_12020	D910_12018	U4UWR0	U4UKZ5	Uncharacterized protein.	Uncharacterized protein.	0.842
D910_12490	D910_12491	N6TL37	N6TE88	SSD domain-containing protein.	Uncharacterized protein.	0.927
D910_12491	D910_12490	N6TE88	N6TL37	Uncharacterized protein.	SSD domain-containing protein.	0.927