34 items (Dendroctonus ponderosae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D910_05355	Uncharacterized protein. (505 aa)
	D910_08407	Uncharacterized protein. (115 aa)
	D910_11133	Vang-like protein. (539 aa)
	D910_11215	Uncharacterized protein. (377 aa)
	D910_09390	Uncharacterized protein. (653 aa)
	D910_09339	Uncharacterized protein. (1844 aa)
	D910_06590	Hepatocyte growth factor-regulated tyrosine kinase substrate; Essential role in endosome membrane invagination and formation of multivesicular bodies, MVBs. Required during gastrulation and appears to regulate early embryonic signaling pathways. Inhibits tyrosine kinase receptor signaling by promoting degradation of the tyrosine-phosphorylated, active receptor, potentially by sorting activated receptors into MVBs. The MVBs are then trafficked to the lysosome where their contents are degraded. (659 aa)
	D910_06083	Uncharacterized protein. (412 aa)
	D910_09144	USP domain-containing protein; Belongs to the peptidase C19 family. (2338 aa)
	D910_05579	Uncharacterized protein. (1655 aa)
	D910_05405	Uncharacterized protein. (211 aa)
	D910_04373	E3 ubiquitin-protein ligase. (858 aa)
	D910_04018	Uncharacterized protein. (1764 aa)
	D910_06269	Uncharacterized protein. (465 aa)
	D910_03175	Protein kinase domain-containing protein. (57 aa)
	D910_03176	SAM domain-containing protein. (405 aa)
	D910_12693	Myosin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (874 aa)
	D910_03527	Uncharacterized protein. (782 aa)
	D910_01737	PX domain-containing protein. (125 aa)
	D910_03173	Uncharacterized protein. (472 aa)
	D910_04175	Uncharacterized protein. (1314 aa)
	D910_01880	Uncharacterized protein. (1631 aa)
	D910_03174	EphA2_TM domain-containing protein. (73 aa)
	D910_00456	PX domain-containing protein. (141 aa)
	D910_05064	Myosin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1218 aa)
	D910_02369	Non-specific serine/threonine protein kinase. (489 aa)
	D910_00614	Uncharacterized protein. (2440 aa)
	D910_01304	Uncharacterized protein. (316 aa)
	D910_06939	Uncharacterized protein. (285 aa)
	D910_05788	Uncharacterized protein. (211 aa)
	D910_09254	Non-specific serine/threonine protein kinase. (468 aa)
	D910_12347	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family. (1715 aa)
	D910_09598	Uncharacterized protein. (7028 aa)
	D910_10889	Non-specific serine/threonine protein kinase. (897 aa)

Your Current Organism:

Dendroctonus ponderosae

NCBI taxonomy Id: 77166
Other names: D. ponderosae, mountain pine beetle

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D910_00614	D910_01880	N6TVD3	U4TWU4	Uncharacterized protein.	Uncharacterized protein.	0.584
D910_00614	D910_02369	N6TVD3	N6U9I5	Uncharacterized protein.	Non-specific serine/threonine protein kinase.	0.428
D910_00614	D910_04175	N6TVD3	U4TYR7	Uncharacterized protein.	Uncharacterized protein.	0.565
D910_00614	D910_04373	N6TVD3	U4UAI6	Uncharacterized protein.	E3 ubiquitin-protein ligase.	0.419
D910_00614	D910_05405	N6TVD3	U4UBN6	Uncharacterized protein.	Uncharacterized protein.	0.863
D910_00614	D910_06269	N6TVD3	U4U768	Uncharacterized protein.	Uncharacterized protein.	0.863
D910_00614	D910_09254	N6TVD3	U4UP54	Uncharacterized protein.	Non-specific serine/threonine protein kinase.	0.556
D910_00614	D910_09339	N6TVD3	U4UG58	Uncharacterized protein.	Uncharacterized protein.	0.863
D910_00614	D910_09390	N6TVD3	U4UI87	Uncharacterized protein.	Uncharacterized protein.	0.566
D910_00614	D910_09598	N6TVD3	U4UQ65	Uncharacterized protein.	Uncharacterized protein.	0.685
D910_00614	D910_10889	N6TVD3	U4UTS8	Uncharacterized protein.	Non-specific serine/threonine protein kinase.	0.428
D910_00614	D910_11215	N6TVD3	U4UIS1	Uncharacterized protein.	Uncharacterized protein.	0.863
D910_00614	D910_12347	N6TVD3	U4UPP0	Uncharacterized protein.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.617
D910_01304	D910_01880	N6T1I2	U4TWU4	Uncharacterized protein.	Uncharacterized protein.	0.989
D910_01304	D910_03173	N6T1I2	U4U0D5	Uncharacterized protein.	Uncharacterized protein.	0.436
D910_01304	D910_03174	N6T1I2	U4TW04	Uncharacterized protein.	EphA2_TM domain-containing protein.	0.436
D910_01304	D910_03175	N6T1I2	U4U722	Uncharacterized protein.	Protein kinase domain-containing protein.	0.436
D910_01304	D910_03176	N6T1I2	U4U588	Uncharacterized protein.	SAM domain-containing protein.	0.436
D910_01304	D910_03527	N6T1I2	U4U1C4	Uncharacterized protein.	Uncharacterized protein.	0.576
D910_01304	D910_04175	N6T1I2	U4TYR7	Uncharacterized protein.	Uncharacterized protein.	0.560