6 items (Dendroctonus ponderosae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D910_12142	AP3B1_C domain-containing protein. (1043 aa)
	D910_04042	AP-1 complex subunit gamma. (996 aa)
	D910_02401	Uncharacterized protein. (932 aa)
	D910_09446	AP-3 complex subunit delta; Belongs to the adaptor complexes large subunit family. (929 aa)
	D910_07638	Uncharacterized protein. (706 aa)
	D910_03131	Cnd1 domain-containing protein. (255 aa)

Your Current Organism:

Dendroctonus ponderosae

NCBI taxonomy Id: 77166
Other names: D. ponderosae, mountain pine beetle

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D910_04042	D910_07638	U4U9M5	U4UI51	AP-1 complex subunit gamma.	Uncharacterized protein.	0.999
D910_04042	D910_12142	U4U9M5	N6TB90	AP-1 complex subunit gamma.	AP3B1_C domain-containing protein.	0.951
D910_07638	D910_04042	U4UI51	U4U9M5	Uncharacterized protein.	AP-1 complex subunit gamma.	0.999
D910_07638	D910_09446	U4UI51	U4UPP7	Uncharacterized protein.	AP-3 complex subunit delta; Belongs to the adaptor complexes large subunit family.	0.947
D910_07638	D910_12142	U4UI51	N6TB90	Uncharacterized protein.	AP3B1_C domain-containing protein.	0.819
D910_09446	D910_07638	U4UPP7	U4UI51	AP-3 complex subunit delta; Belongs to the adaptor complexes large subunit family.	Uncharacterized protein.	0.947
D910_09446	D910_12142	U4UPP7	N6TB90	AP-3 complex subunit delta; Belongs to the adaptor complexes large subunit family.	AP3B1_C domain-containing protein.	0.999
D910_12142	D910_04042	N6TB90	U4U9M5	AP3B1_C domain-containing protein.	AP-1 complex subunit gamma.	0.951
D910_12142	D910_07638	N6TB90	U4UI51	AP3B1_C domain-containing protein.	Uncharacterized protein.	0.819
D910_12142	D910_09446	N6TB90	U4UPP7	AP3B1_C domain-containing protein.	AP-3 complex subunit delta; Belongs to the adaptor complexes large subunit family.	0.999