17 items (Dendroctonus ponderosae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D910_07314	t-SNARE coiled-coil homology domain-containing protein. (233 aa)
	D910_12757	Uncharacterized protein. (215 aa)
	D910_06682	Uncharacterized protein; Belongs to the synaptobrevin family. (220 aa)
	D910_05672	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (309 aa)
	D910_03933	Uncharacterized protein. (129 aa)
	D910_05698	Uncharacterized protein; Belongs to the synaptobrevin family. (199 aa)
	D910_00262	V-SNARE coiled-coil homology domain-containing protein. (95 aa)
	D910_03440	t-SNARE coiled-coil homology domain-containing protein. (546 aa)
	D910_05685	Uncharacterized protein; Belongs to the synaptobrevin family. (246 aa)
	D910_09416	Uncharacterized protein. (223 aa)
	D910_06618	t-SNARE coiled-coil homology domain-containing protein. (306 aa)
	D910_08806	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (264 aa)
	D910_05873	t-SNARE coiled-coil homology domain-containing protein. (216 aa)
	D910_04039	t-SNARE coiled-coil homology domain-containing protein. (108 aa)
	D910_05252	Uncharacterized protein. (250 aa)
	D910_07184	t-SNARE coiled-coil homology domain-containing protein. (287 aa)
	D910_09336	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (716 aa)

Your Current Organism:

Dendroctonus ponderosae

NCBI taxonomy Id: 77166
Other names: D. ponderosae, mountain pine beetle

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D910_00262	D910_03933	N6T9N7	N6SRH7	V-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.959
D910_00262	D910_04039	N6T9N7	U4U0L8	V-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.928
D910_00262	D910_05252	N6T9N7	U4U1Z9	V-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.967
D910_00262	D910_05672	N6T9N7	J3JZE9	V-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.941
D910_00262	D910_05685	N6T9N7	N6TZX5	V-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.628
D910_00262	D910_05698	N6T9N7	N6T1G7	V-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.800
D910_00262	D910_05873	N6T9N7	N6UGU0	V-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.966
D910_00262	D910_06618	N6T9N7	N6U9N4	V-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.673
D910_00262	D910_06682	N6T9N7	J3JY72	V-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.746
D910_00262	D910_07184	N6T9N7	U4U7F9	V-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.992
D910_00262	D910_07314	N6T9N7	J3JW43	V-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.951
D910_00262	D910_08806	N6T9N7	N6UDA0	V-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.897
D910_00262	D910_09336	N6T9N7	U4UDG3	V-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.975
D910_00262	D910_12757	N6T9N7	J3JWX7	V-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.504
D910_03440	D910_05252	N6TE21	U4U1Z9	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.802
D910_03933	D910_00262	N6SRH7	N6T9N7	Uncharacterized protein.	V-SNARE coiled-coil homology domain-containing protein.	0.959
D910_03933	D910_04039	N6SRH7	U4U0L8	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein.	0.674
D910_03933	D910_05252	N6SRH7	U4U1Z9	Uncharacterized protein.	Uncharacterized protein.	0.458
D910_03933	D910_05672	N6SRH7	J3JZE9	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.959
D910_03933	D910_05685	N6SRH7	N6TZX5	Uncharacterized protein.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.927