(18 nodes) De novo protein folding, and DnaJ homolog subfamily A member 1/2-like network (Sordaria macrospora)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SMAC_00245	WGS project CABT00000000 data, contig 2.1. (483 aa)
	SMAC_00364	WGS project CABT00000000 data, contig 2.1. (414 aa)
	SMAC_01211	WGS project CABT00000000 data, contig 2.4. (445 aa)
	SMAC_01370	WGS project CABT00000000 data, contig 2.4; Belongs to the heat shock protein 70 family. (571 aa)
	SMAC_01394	WGS project CABT00000000 data, contig 2.4. (576 aa)
	SMAC_01721	WGS project CABT00000000 data, contig 2.5. (707 aa)
	SMAC_01899	WGS project CABT00000000 data, contig 2.5. (427 aa)
	SMAC_05738	WGS project CABT00000000 data, contig 2.6. (830 aa)
	SMAC_04972	WGS project CABT00000000 data, contig 2.8; Belongs to the heat shock protein 70 family. (632 aa)
	SMAC_08314	WGS project CABT00000000 data, contig 2.9. (518 aa)
	SMAC_02583	WGS project CABT00000000 data, contig 2.11. (340 aa)
	SMAC_04417	WGS project CABT00000000 data, contig 2.14. (234 aa)
	SMAC_04098	WGS project CABT00000000 data, contig 2.15. (361 aa)
	SMAC_02067	WGS project CABT00000000 data, contig 2.18. (166 aa)
	SMAC_05549	WGS project CABT00000000 data, contig 2.26. (425 aa)
	SMAC_06157	WGS project CABT00000000 data, contig 2.33; Belongs to the heat shock protein 70 family. (645 aa)
	SMAC_08187	WGS project CABT00000000 data, contig 2.53. (1004 aa)
	SMAC_08900	WGS project CABT00000000 data, contig 2.69; Belongs to the heat shock protein 70 family. (624 aa)

Your Current Organism:

Sordaria macrospora

NCBI taxonomy Id: 771870
Other names: S. macrospora k-hell, Sordaria macrospora k-hell

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Export your current network:

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SMAC_00245	SMAC_00364	F7VKK2	F7VKX0	WGS project CABT00000000 data, contig 2.1.	WGS project CABT00000000 data, contig 2.1.	0.457
SMAC_00245	SMAC_01370	F7VKK2	F7VQM2	WGS project CABT00000000 data, contig 2.1.	WGS project CABT00000000 data, contig 2.4; Belongs to the heat shock protein 70 family.	0.442
SMAC_00245	SMAC_01394	F7VKK2	F7VQP6	WGS project CABT00000000 data, contig 2.1.	WGS project CABT00000000 data, contig 2.4.	0.590
SMAC_00245	SMAC_01721	F7VKK2	F7VRN7	WGS project CABT00000000 data, contig 2.1.	WGS project CABT00000000 data, contig 2.5.	0.607
SMAC_00245	SMAC_01899	F7VKK2	F7VS65	WGS project CABT00000000 data, contig 2.1.	WGS project CABT00000000 data, contig 2.5.	0.457
SMAC_00245	SMAC_02067	F7VKK2	F7W0V7	WGS project CABT00000000 data, contig 2.1.	WGS project CABT00000000 data, contig 2.18.	0.687
SMAC_00245	SMAC_02583	F7VKK2	F7VWW2	WGS project CABT00000000 data, contig 2.1.	WGS project CABT00000000 data, contig 2.11.	0.687
SMAC_00245	SMAC_04098	F7VKK2	F7VZB9	WGS project CABT00000000 data, contig 2.1.	WGS project CABT00000000 data, contig 2.15.	0.408
SMAC_00245	SMAC_04417	F7VKK2	F7VYZ8	WGS project CABT00000000 data, contig 2.1.	WGS project CABT00000000 data, contig 2.14.	0.469
SMAC_00245	SMAC_04972	F7VKK2	F7VUL7	WGS project CABT00000000 data, contig 2.1.	WGS project CABT00000000 data, contig 2.8; Belongs to the heat shock protein 70 family.	0.442
SMAC_00245	SMAC_05549	F7VKK2	F7W417	WGS project CABT00000000 data, contig 2.1.	WGS project CABT00000000 data, contig 2.26.	0.520
SMAC_00245	SMAC_05738	F7VKK2	F7VT38	WGS project CABT00000000 data, contig 2.1.	WGS project CABT00000000 data, contig 2.6.	0.877
SMAC_00245	SMAC_06157	F7VKK2	F7W676	WGS project CABT00000000 data, contig 2.1.	WGS project CABT00000000 data, contig 2.33; Belongs to the heat shock protein 70 family.	0.877
SMAC_00245	SMAC_08187	F7VKK2	F7W9M9	WGS project CABT00000000 data, contig 2.1.	WGS project CABT00000000 data, contig 2.53.	0.958
SMAC_00245	SMAC_08900	F7VKK2	F7WB19	WGS project CABT00000000 data, contig 2.1.	WGS project CABT00000000 data, contig 2.69; Belongs to the heat shock protein 70 family.	0.442
SMAC_00364	SMAC_00245	F7VKX0	F7VKK2	WGS project CABT00000000 data, contig 2.1.	WGS project CABT00000000 data, contig 2.1.	0.457
SMAC_00364	SMAC_01211	F7VKX0	F7VQ61	WGS project CABT00000000 data, contig 2.1.	WGS project CABT00000000 data, contig 2.4.	0.519
SMAC_00364	SMAC_01370	F7VKX0	F7VQM2	WGS project CABT00000000 data, contig 2.1.	WGS project CABT00000000 data, contig 2.4; Belongs to the heat shock protein 70 family.	0.881
SMAC_00364	SMAC_01394	F7VKX0	F7VQP6	WGS project CABT00000000 data, contig 2.1.	WGS project CABT00000000 data, contig 2.4.	0.868
SMAC_00364	SMAC_01721	F7VKX0	F7VRN7	WGS project CABT00000000 data, contig 2.1.	WGS project CABT00000000 data, contig 2.5.	0.822