(11 nodes) Cellular response to pheromone, and PB1 domain network (Sordaria macrospora)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SMAC_00132	WGS project CABT00000000 data, contig 2.1. (124 aa)
	SMAC_07448	Putative CDC24 protein. (1007 aa)
	SMAC_00863	Putative RhoGAP group protein. (1140 aa)
	SMAC_01876	WGS project CABT00000000 data, contig 2.5. (358 aa)
	SMAC_01989	WGS project CABT00000000 data, contig 2.5. (1141 aa)
	SMAC_03492	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily. (352 aa)
	SMAC_08843	Non-specific serine/threonine protein kinase. (834 aa)
	SMAC_04720	WGS project CABT00000000 data, contig 2.21. (629 aa)
	SMAC_02216	Putative CDC42 protein. (196 aa)
	SMAC_06526	Putative MEK2 protein. (501 aa)
	SMAC_06321	Non-specific serine/threonine protein kinase. (920 aa)

Your Current Organism:

Sordaria macrospora

NCBI taxonomy Id: 771870
Other names: S. macrospora k-hell, Sordaria macrospora k-hell

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SMAC_00132	SMAC_01876	F7VK90	F7VS43	WGS project CABT00000000 data, contig 2.1.	WGS project CABT00000000 data, contig 2.5.	0.995
SMAC_00132	SMAC_01989	F7VK90	F7VSF9	WGS project CABT00000000 data, contig 2.1.	WGS project CABT00000000 data, contig 2.5.	0.651
SMAC_00132	SMAC_03492	F7VK90	F7VVC1	WGS project CABT00000000 data, contig 2.1.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.522
SMAC_00132	SMAC_06321	F7VK90	F7W6G4	WGS project CABT00000000 data, contig 2.1.	Non-specific serine/threonine protein kinase.	0.922
SMAC_00132	SMAC_06526	F7VK90	F7W4K9	WGS project CABT00000000 data, contig 2.1.	Putative MEK2 protein.	0.614
SMAC_00132	SMAC_07448	F7VK90	F7VM13	WGS project CABT00000000 data, contig 2.1.	Putative CDC24 protein.	0.560
SMAC_00132	SMAC_08843	F7VK90	F7VYN9	WGS project CABT00000000 data, contig 2.1.	Non-specific serine/threonine protein kinase.	0.922
SMAC_00863	SMAC_01989	F7VNA5	F7VSF9	Putative RhoGAP group protein.	WGS project CABT00000000 data, contig 2.5.	0.435
SMAC_00863	SMAC_02216	F7VNA5	F7W2Z2	Putative RhoGAP group protein.	Putative CDC42 protein.	0.999
SMAC_00863	SMAC_03492	F7VNA5	F7VVC1	Putative RhoGAP group protein.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.758
SMAC_00863	SMAC_04720	F7VNA5	F7W288	Putative RhoGAP group protein.	WGS project CABT00000000 data, contig 2.21.	0.767
SMAC_00863	SMAC_06321	F7VNA5	F7W6G4	Putative RhoGAP group protein.	Non-specific serine/threonine protein kinase.	0.996
SMAC_00863	SMAC_07448	F7VNA5	F7VM13	Putative RhoGAP group protein.	Putative CDC24 protein.	0.954
SMAC_00863	SMAC_08843	F7VNA5	F7VYN9	Putative RhoGAP group protein.	Non-specific serine/threonine protein kinase.	0.996
SMAC_01876	SMAC_00132	F7VS43	F7VK90	WGS project CABT00000000 data, contig 2.5.	WGS project CABT00000000 data, contig 2.1.	0.995
SMAC_01876	SMAC_01989	F7VS43	F7VSF9	WGS project CABT00000000 data, contig 2.5.	WGS project CABT00000000 data, contig 2.5.	0.673
SMAC_01876	SMAC_02216	F7VS43	F7W2Z2	WGS project CABT00000000 data, contig 2.5.	Putative CDC42 protein.	0.769
SMAC_01876	SMAC_03492	F7VS43	F7VVC1	WGS project CABT00000000 data, contig 2.5.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.727
SMAC_01876	SMAC_06321	F7VS43	F7W6G4	WGS project CABT00000000 data, contig 2.5.	Non-specific serine/threonine protein kinase.	0.977
SMAC_01876	SMAC_06526	F7VS43	F7W4K9	WGS project CABT00000000 data, contig 2.5.	Putative MEK2 protein.	0.647