STRINGSTRING
SMAC_00084 SMAC_00084 SMAC_00601 SMAC_00601 SMAC_02305 SMAC_02305 SMAC_01337 SMAC_01337 ATG3 ATG3 SMAC_08343 SMAC_08343 SMAC_08321 SMAC_08321 SMAC_02852 SMAC_02852 SMAC_04753 SMAC_04753 ATG7 ATG7 ATG12 ATG12
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SMAC_00084WGS project CABT00000000 data, contig 2.1. (233 aa)
SMAC_00601WGS project CABT00000000 data, contig 2.1. (1101 aa)
SMAC_02305Autophagy-related protein. (121 aa)
SMAC_01337Phosphatidylinositol 3-kinase VPS34. (914 aa)
ATG3Autophagy-related protein 3; E2 conjugating enzyme required for the cytoplasm to vacuole transport (Cvt) and autophagy (By similarity). Required for selective autophagic degradation of the nucleus (nucleophagy) as well as for mitophagy which contributes to regulate mitochondrial quantity and quality by eliminating the mitochondria to a basal level to fulfill cellular energy requirements and preventing excess ROS production (By similarity). Responsible for the E2-like covalent binding of phosphatidylethanolamine to the C-terminal Gly of ATG8 (By similarity). The ATG12-ATG5 conjugate pla [...] (346 aa)
SMAC_08343Autophagy protein 5; Involved in cytoplasm to vacuole transport (Cvt) and autophagic vesicle formation. (366 aa)
SMAC_08321Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy. (515 aa)
SMAC_02852WGS project CABT00000000 data, contig 2.12. (514 aa)
SMAC_04753WGS project CABT00000000 data, contig 2.21. (1551 aa)
ATG7Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for cytoplasm to vacuole transport (Cvt) and autophagy. Activates ATG12 for its conjugation with ATG5 and ATG8 for its conjugation with phosphatidylethanolamine (By similarity). Both systems are needed for the ATG8 association to Cvt vesicles and autophagosomes membranes (By similarity). Autophagy is essential for maintenance of amino acid levels and protein synthesis under nitrogen starvation. Required for selective autophagic degradation of the nucleus (nucleoph [...] (699 aa)
ATG12Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt), autophagy vesicles formation, mitophagy, and nucleophagy (By similarity). Conjugation with ATG5 through a ubiquitin- like conjugating system involving also ATG7 as an E1-like activating enzyme and ATG10 as an E2-like conjugating enzyme, is essential for its function (By similarity). The ATG12-ATG5 conjugate acts as an E3-like enzyme which is required for lipidation of ATG8 and ATG8 association to the vesicle membranes. ATG12-ATG5 rearranges the ATG3 catalytic center and enhances its E [...] (159 aa)
Your Current Organism:
Sordaria macrospora
NCBI taxonomy Id: 771870
Other names: S. macrospora k-hell, Sordaria macrospora k-hell
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