STRINGSTRING
SMAC_00646 SMAC_00646 SMAC_06728 SMAC_06728 SMAC_06737 SMAC_06737 SMAC_03493 SMAC_03493 SMAC_02664 SMAC_02664 SMAC_06448 SMAC_06448 SMAC_06445 SMAC_06445 SMAC_06444 SMAC_06444 SMAC_03762 SMAC_03762 SMAC_03953 SMAC_03953 SMAC_04008 SMAC_04008 SMAC_02261 SMAC_02261 SMAC_05866 SMAC_05866 SMAC_05922 SMAC_05922 SMAC_07079 SMAC_07079 SMAC_07218 SMAC_07218
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SMAC_00646WGS project CABT00000000 data, contig 2.2; Belongs to the WD repeat SEC13 family. (305 aa)
SMAC_06728WGS project CABT00000000 data, contig 2.3. (1226 aa)
SMAC_06737WGS project CABT00000000 data, contig 2.3. (332 aa)
SMAC_03493WGS project CABT00000000 data, contig 2.9. (913 aa)
SMAC_02664Protein transport protein sec16; Involved in the initiation of assembly of the COPII coat required for the formation of transport vesicles from the endoplasmic reticulum (ER) and the selection of cargo molecules. Also involved in autophagy; Belongs to the SEC16 family. (2034 aa)
SMAC_06448WGS project CABT00000000 data, contig 2.13. (680 aa)
SMAC_06445WGS project CABT00000000 data, contig 2.13; Belongs to the small GTPase superfamily. SAR1 family. (202 aa)
SMAC_06444WGS project CABT00000000 data, contig 2.13. (716 aa)
SMAC_03762WGS project CABT00000000 data, contig 2.16. (82 aa)
SMAC_03953WGS project CABT00000000 data, contig 2.17. (461 aa)
SMAC_04008Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily. (775 aa)
SMAC_02261WGS project CABT00000000 data, contig 2.23. (471 aa)
SMAC_05866WGS project CABT00000000 data, contig 2.24. (138 aa)
SMAC_05922WGS project CABT00000000 data, contig 2.24. (1053 aa)
SMAC_07079WGS project CABT00000000 data, contig 2.39. (318 aa)
SMAC_07218Putative heterokaryon incompatibility protein. (293 aa)
Your Current Organism:
Sordaria macrospora
NCBI taxonomy Id: 771870
Other names: S. macrospora k-hell, Sordaria macrospora k-hell
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