STRINGSTRING
SMAC_00226 SMAC_00226 SMAC_00391 SMAC_00391 SMAC_02371 SMAC_02371 SMAC_02395 SMAC_02395 SMAC_02429 SMAC_02429 SMAC_06768 SMAC_06768 SMAC_01930 SMAC_01930 SMAC_06810 SMAC_06810 SMAC_07829 SMAC_07829 SMAC_04363 SMAC_04363 SMAC_05632 SMAC_05632 SMAC_06316 SMAC_06316 SMAC_06625 SMAC_06625 SMAC_09359 SMAC_09359 SMAC_08261 SMAC_08261
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SMAC_00226WGS project CABT00000000 data, contig 2.1. (3209 aa)
SMAC_00391WGS project CABT00000000 data, contig 2.1. (382 aa)
SMAC_02371WGS project CABT00000000 data, contig 2.3. (1170 aa)
SMAC_02395WGS project CABT00000000 data, contig 2.3. (292 aa)
SMAC_02429WGS project CABT00000000 data, contig 2.3. (182 aa)
SMAC_06768WGS project CABT00000000 data, contig 2.3; Belongs to the syntaxin family. (273 aa)
SMAC_01930WGS project CABT00000000 data, contig 2.5; Belongs to the synaptobrevin family. (198 aa)
SMAC_06810WGS project CABT00000000 data, contig 2.6. (317 aa)
SMAC_07829WGS project CABT00000000 data, contig 2.14; Belongs to the STXBP/unc-18/SEC1 family. (709 aa)
SMAC_04363Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor. (227 aa)
SMAC_05632Protein transport protein BOS1; SNARE required for protein transport between the ER and the Golgi complex. (266 aa)
SMAC_06316WGS project CABT00000000 data, contig 2.34. (98 aa)
SMAC_06625WGS project CABT00000000 data, contig 2.37; Belongs to the synaptobrevin family. (217 aa)
SMAC_09359WGS project CABT00000000 data, contig 2.41. (2466 aa)
SMAC_08261WGS project CABT00000000 data, contig 2.56. (859 aa)
Your Current Organism:
Sordaria macrospora
NCBI taxonomy Id: 771870
Other names: S. macrospora k-hell, Sordaria macrospora k-hell
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