(10 nodes) SNARE complex, and CDC48, domain 2 network (Sordaria macrospora)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SMAC_02395	WGS project CABT00000000 data, contig 2.3. (292 aa)
	SMAC_02429	WGS project CABT00000000 data, contig 2.3. (182 aa)
	SMAC_06768	WGS project CABT00000000 data, contig 2.3; Belongs to the syntaxin family. (273 aa)
	SMAC_01930	WGS project CABT00000000 data, contig 2.5; Belongs to the synaptobrevin family. (198 aa)
	SMAC_06810	WGS project CABT00000000 data, contig 2.6. (317 aa)
	SMAC_07829	WGS project CABT00000000 data, contig 2.14; Belongs to the STXBP/unc-18/SEC1 family. (709 aa)
	SMAC_04363	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor. (227 aa)
	SMAC_05632	Protein transport protein BOS1; SNARE required for protein transport between the ER and the Golgi complex. (266 aa)
	SMAC_06625	WGS project CABT00000000 data, contig 2.37; Belongs to the synaptobrevin family. (217 aa)
	SMAC_08261	WGS project CABT00000000 data, contig 2.56. (859 aa)

Your Current Organism:

Sordaria macrospora

NCBI taxonomy Id: 771870
Other names: S. macrospora k-hell, Sordaria macrospora k-hell

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SMAC_01930	SMAC_02395	F7VS98	F7VPG1	WGS project CABT00000000 data, contig 2.5; Belongs to the synaptobrevin family.	WGS project CABT00000000 data, contig 2.3.	0.985
SMAC_01930	SMAC_02429	F7VS98	F7VPJ5	WGS project CABT00000000 data, contig 2.5; Belongs to the synaptobrevin family.	WGS project CABT00000000 data, contig 2.3.	0.998
SMAC_01930	SMAC_04363	F7VS98	F7W1M1	WGS project CABT00000000 data, contig 2.5; Belongs to the synaptobrevin family.	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	0.999
SMAC_01930	SMAC_05632	F7VS98	F7W583	WGS project CABT00000000 data, contig 2.5; Belongs to the synaptobrevin family.	Protein transport protein BOS1; SNARE required for protein transport between the ER and the Golgi complex.	0.997
SMAC_01930	SMAC_06625	F7VS98	F7W746	WGS project CABT00000000 data, contig 2.5; Belongs to the synaptobrevin family.	WGS project CABT00000000 data, contig 2.37; Belongs to the synaptobrevin family.	0.998
SMAC_01930	SMAC_06768	F7VS98	F7VPY8	WGS project CABT00000000 data, contig 2.5; Belongs to the synaptobrevin family.	WGS project CABT00000000 data, contig 2.3; Belongs to the syntaxin family.	0.994
SMAC_01930	SMAC_06810	F7VS98	F7VSQ2	WGS project CABT00000000 data, contig 2.5; Belongs to the synaptobrevin family.	WGS project CABT00000000 data, contig 2.6.	0.999
SMAC_01930	SMAC_07829	F7VS98	F7VZ65	WGS project CABT00000000 data, contig 2.5; Belongs to the synaptobrevin family.	WGS project CABT00000000 data, contig 2.14; Belongs to the STXBP/unc-18/SEC1 family.	0.996
SMAC_01930	SMAC_08261	F7VS98	F7W9Y5	WGS project CABT00000000 data, contig 2.5; Belongs to the synaptobrevin family.	WGS project CABT00000000 data, contig 2.56.	0.940
SMAC_02395	SMAC_01930	F7VPG1	F7VS98	WGS project CABT00000000 data, contig 2.3.	WGS project CABT00000000 data, contig 2.5; Belongs to the synaptobrevin family.	0.985
SMAC_02395	SMAC_02429	F7VPG1	F7VPJ5	WGS project CABT00000000 data, contig 2.3.	WGS project CABT00000000 data, contig 2.3.	0.955
SMAC_02395	SMAC_04363	F7VPG1	F7W1M1	WGS project CABT00000000 data, contig 2.3.	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	0.952
SMAC_02395	SMAC_05632	F7VPG1	F7W583	WGS project CABT00000000 data, contig 2.3.	Protein transport protein BOS1; SNARE required for protein transport between the ER and the Golgi complex.	0.943
SMAC_02395	SMAC_06625	F7VPG1	F7W746	WGS project CABT00000000 data, contig 2.3.	WGS project CABT00000000 data, contig 2.37; Belongs to the synaptobrevin family.	0.995
SMAC_02395	SMAC_06768	F7VPG1	F7VPY8	WGS project CABT00000000 data, contig 2.3.	WGS project CABT00000000 data, contig 2.3; Belongs to the syntaxin family.	0.993
SMAC_02395	SMAC_06810	F7VPG1	F7VSQ2	WGS project CABT00000000 data, contig 2.3.	WGS project CABT00000000 data, contig 2.6.	0.989
SMAC_02395	SMAC_07829	F7VPG1	F7VZ65	WGS project CABT00000000 data, contig 2.3.	WGS project CABT00000000 data, contig 2.14; Belongs to the STXBP/unc-18/SEC1 family.	0.996
SMAC_02395	SMAC_08261	F7VPG1	F7W9Y5	WGS project CABT00000000 data, contig 2.3.	WGS project CABT00000000 data, contig 2.56.	0.996
SMAC_02429	SMAC_01930	F7VPJ5	F7VS98	WGS project CABT00000000 data, contig 2.3.	WGS project CABT00000000 data, contig 2.5; Belongs to the synaptobrevin family.	0.998
SMAC_02429	SMAC_02395	F7VPJ5	F7VPG1	WGS project CABT00000000 data, contig 2.3.	WGS project CABT00000000 data, contig 2.3.	0.955