STRINGSTRING
SMAC_00772 SMAC_00772 SMAC_02469 SMAC_02469 SMAC_01238 SMAC_01238 SMAC_01739 SMAC_01739 SMAC_01807 SMAC_01807 SMAC_03966 SMAC_03966 SMAC_08825 SMAC_08825
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SMAC_00772WGS project CABT00000000 data, contig 2.2. (323 aa)
SMAC_02469WGS project CABT00000000 data, contig 2.3. (412 aa)
SMAC_01238WGS project CABT00000000 data, contig 2.4; Belongs to the Nudix hydrolase family. (204 aa)
SMAC_01739WGS project CABT00000000 data, contig 2.5. (483 aa)
SMAC_01807Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway. (335 aa)
SMAC_03966WGS project CABT00000000 data, contig 2.17. (501 aa)
SMAC_08825WGS project CABT00000000 data, contig 2.66; Belongs to the Nudix hydrolase family. (286 aa)
Your Current Organism:
Sordaria macrospora
NCBI taxonomy Id: 771870
Other names: S. macrospora k-hell, Sordaria macrospora k-hell
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