STRINGSTRING
SMAC_00221 SMAC_00221 SMAC_02504 SMAC_02504 SMAC_05989 SMAC_05989 SMAC_03031 SMAC_03031 SMAC_05223 SMAC_05223 SMAC_03406 SMAC_03406 SMAC_02858 SMAC_02858 SMAC_04370 SMAC_04370 SMAC_03823 SMAC_03823 SMAC_04682 SMAC_04682 SMAC_05362 SMAC_05362 SMAC_07903 SMAC_07903 SMAC_06275 SMAC_06275 SMAC_06919 SMAC_06919 SMAC_08629 SMAC_08629
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SMAC_00221WGS project CABT00000000 data, contig 2.1. (385 aa)
SMAC_02504WGS project CABT00000000 data, contig 2.3. (447 aa)
SMAC_05989WGS project CABT00000000 data, contig 2.6. (617 aa)
SMAC_03031WGS project CABT00000000 data, contig 2.7; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (385 aa)
SMAC_05223Malate synthase; Belongs to the malate synthase family. (542 aa)
SMAC_03406WGS project CABT00000000 data, contig 2.10. (508 aa)
SMAC_02858Urease; In the C-terminal section; belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family. (855 aa)
SMAC_04370Isocitrate lyase. (548 aa)
SMAC_03823WGS project CABT00000000 data, contig 2.16; Belongs to the DapA family. (352 aa)
SMAC_04682WGS project CABT00000000 data, contig 2.21. (362 aa)
SMAC_053625-aminolevulinate synthase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. (631 aa)
SMAC_07903WGS project CABT00000000 data, contig 2.29. (372 aa)
SMAC_06275WGS project CABT00000000 data, contig 2.34. (256 aa)
SMAC_06919WGS project CABT00000000 data, contig 2.38. (446 aa)
SMAC_08629WGS project CABT00000000 data, contig 2.61; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (439 aa)
Your Current Organism:
Sordaria macrospora
NCBI taxonomy Id: 771870
Other names: S. macrospora k-hell, Sordaria macrospora k-hell
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.