10 items (Sordaria macrospora) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SMAC_08869	WGS project CABT00000000 data, contig 2.67; Belongs to the aldehyde dehydrogenase family. (474 aa)
	SMAC_05655	WGS project CABT00000000 data, contig 2.30. (437 aa)
	SMAC_03900	WGS project CABT00000000 data, contig 2.16; Belongs to the aldehyde dehydrogenase family. (479 aa)
	SMAC_06449	WGS project CABT00000000 data, contig 2.13; Belongs to the aldehyde dehydrogenase family. (495 aa)
	SMAC_00221	WGS project CABT00000000 data, contig 2.1. (385 aa)
	SMAC_07383	Threonine dehydratase. (523 aa)
	SMAC_03146	WGS project CABT00000000 data, contig 2.7. (393 aa)
	SMAC_02611	WGS project CABT00000000 data, contig 2.11. (376 aa)
	SMAC_04083	WGS project CABT00000000 data, contig 2.15. (486 aa)
	SMAC_07270	WGS project CABT00000000 data, contig 2.44; Belongs to the aldehyde dehydrogenase family. (484 aa)

Your Current Organism:

Sordaria macrospora

NCBI taxonomy Id: 771870
Other names: S. macrospora k-hell, Sordaria macrospora k-hell

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SMAC_00221	SMAC_02611	F7VKH8	F7VWZ0	WGS project CABT00000000 data, contig 2.1.	WGS project CABT00000000 data, contig 2.11.	0.937
SMAC_00221	SMAC_03146	F7VKH8	F7VU37	WGS project CABT00000000 data, contig 2.1.	WGS project CABT00000000 data, contig 2.7.	0.403
SMAC_00221	SMAC_07383	F7VKH8	F7VM81	WGS project CABT00000000 data, contig 2.1.	Threonine dehydratase.	0.964
SMAC_02611	SMAC_00221	F7VWZ0	F7VKH8	WGS project CABT00000000 data, contig 2.11.	WGS project CABT00000000 data, contig 2.1.	0.937
SMAC_02611	SMAC_07383	F7VWZ0	F7VM81	WGS project CABT00000000 data, contig 2.11.	Threonine dehydratase.	0.917
SMAC_03146	SMAC_00221	F7VU37	F7VKH8	WGS project CABT00000000 data, contig 2.7.	WGS project CABT00000000 data, contig 2.1.	0.403
SMAC_03900	SMAC_06449	F7W095	F7VYL5	WGS project CABT00000000 data, contig 2.16; Belongs to the aldehyde dehydrogenase family.	WGS project CABT00000000 data, contig 2.13; Belongs to the aldehyde dehydrogenase family.	0.905
SMAC_03900	SMAC_08869	F7W095	F7WAY9	WGS project CABT00000000 data, contig 2.16; Belongs to the aldehyde dehydrogenase family.	WGS project CABT00000000 data, contig 2.67; Belongs to the aldehyde dehydrogenase family.	0.905
SMAC_06449	SMAC_03900	F7VYL5	F7W095	WGS project CABT00000000 data, contig 2.13; Belongs to the aldehyde dehydrogenase family.	WGS project CABT00000000 data, contig 2.16; Belongs to the aldehyde dehydrogenase family.	0.905
SMAC_06449	SMAC_08869	F7VYL5	F7WAY9	WGS project CABT00000000 data, contig 2.13; Belongs to the aldehyde dehydrogenase family.	WGS project CABT00000000 data, contig 2.67; Belongs to the aldehyde dehydrogenase family.	0.902
SMAC_07383	SMAC_00221	F7VM81	F7VKH8	Threonine dehydratase.	WGS project CABT00000000 data, contig 2.1.	0.964
SMAC_07383	SMAC_02611	F7VM81	F7VWZ0	Threonine dehydratase.	WGS project CABT00000000 data, contig 2.11.	0.917
SMAC_08869	SMAC_03900	F7WAY9	F7W095	WGS project CABT00000000 data, contig 2.67; Belongs to the aldehyde dehydrogenase family.	WGS project CABT00000000 data, contig 2.16; Belongs to the aldehyde dehydrogenase family.	0.905
SMAC_08869	SMAC_06449	F7WAY9	F7VYL5	WGS project CABT00000000 data, contig 2.67; Belongs to the aldehyde dehydrogenase family.	WGS project CABT00000000 data, contig 2.13; Belongs to the aldehyde dehydrogenase family.	0.902