(10 nodes) Positive regulation of autophagy network (Sordaria macrospora)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SMAC_07553	WGS project CABT00000000 data, contig 2.7. (1649 aa)
	SMAC_01798	WGS project CABT00000000 data, contig 2.5; Belongs to the eIF-2B alpha/beta/delta subunits family. (375 aa)
	SMAC_01486	WGS project CABT00000000 data, contig 2.4. (158 aa)
	SMAC_00843	WGS project CABT00000000 data, contig 2.2. (2014 aa)
	SMAC_00411	WGS project CABT00000000 data, contig 2.1. (402 aa)
	SMAC_07185	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (516 aa)
	SMAC_07639	WGS project CABT00000000 data, contig 2.31. (316 aa)
	SMAC_02967	WGS project CABT00000000 data, contig 2.12. (484 aa)
	SMAC_02936	WGS project CABT00000000 data, contig 2.12. (499 aa)
	SMAC_02534	WGS project CABT00000000 data, contig 2.11; Belongs to the protein kinase superfamily. (406 aa)

Your Current Organism:

Sordaria macrospora

NCBI taxonomy Id: 771870
Other names: S. macrospora k-hell, Sordaria macrospora k-hell

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SMAC_00411	SMAC_00843	F7VL16	F7VN84	WGS project CABT00000000 data, contig 2.1.	WGS project CABT00000000 data, contig 2.2.	0.999
SMAC_00843	SMAC_00411	F7VN84	F7VL16	WGS project CABT00000000 data, contig 2.2.	WGS project CABT00000000 data, contig 2.1.	0.999
SMAC_01798	SMAC_07553	F7VRW4	F7VTS9	WGS project CABT00000000 data, contig 2.5; Belongs to the eIF-2B alpha/beta/delta subunits family.	WGS project CABT00000000 data, contig 2.7.	0.779
SMAC_07553	SMAC_01798	F7VTS9	F7VRW4	WGS project CABT00000000 data, contig 2.7.	WGS project CABT00000000 data, contig 2.5; Belongs to the eIF-2B alpha/beta/delta subunits family.	0.779
SMAC_07553	SMAC_07639	F7VTS9	F7W5K7	WGS project CABT00000000 data, contig 2.7.	WGS project CABT00000000 data, contig 2.31.	0.536
SMAC_07639	SMAC_07553	F7W5K7	F7VTS9	WGS project CABT00000000 data, contig 2.31.	WGS project CABT00000000 data, contig 2.7.	0.536