STRINGSTRING
SMAC_00477 SMAC_00477 SMAC_07579 SMAC_07579 SMAC_04568 SMAC_04568 SMAC_06692 SMAC_06692 SMAC_03707 SMAC_03707 SMAC_08311 SMAC_08311
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SMAC_00477WGS project CABT00000000 data, contig 2.1. (437 aa)
SMAC_07579WGS project CABT00000000 data, contig 2.27. (465 aa)
SMAC_04568WGS project CABT00000000 data, contig 2.20. (899 aa)
SMAC_06692WGS project CABT00000000 data, contig 2.13. (937 aa)
SMAC_03707WGS project CABT00000000 data, contig 2.9. (826 aa)
SMAC_08311Conserved oligomeric Golgi complex subunit 6; Acts as component of the peripheral membrane COG complex that is involved in intra-Golgi protein trafficking. COG is located at the cis-Golgi, and regulates tethering of retrograde intra-Golgi vesicles and possibly a number of other membrane trafficking events. (714 aa)
Your Current Organism:
Sordaria macrospora
NCBI taxonomy Id: 771870
Other names: S. macrospora k-hell, Sordaria macrospora k-hell
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