STRINGSTRING
SMAC_09459 SMAC_09459 SMAC_06525 SMAC_06525 SMAC_07111 SMAC_07111 SMAC_06134 SMAC_06134 SMAC_06323 SMAC_06323 SMAC_04644 SMAC_04644 SMAC_02119 SMAC_02119
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SMAC_09459WGS project CABT00000000 data, contig 2.5. (397 aa)
SMAC_06525Transcription elongation factor Spt6; Plays a role in maintenance of chromatin structure during RNA polymerase II transcription elongation thereby repressing transcription initiation from cryptic promoters. Mediates the reassembly of nucleosomes onto the promoters of at least a selected set of genes during repression; the nucleosome reassembly is essential for transcriptional repression; Belongs to the SPT6 family. (1386 aa)
SMAC_07111Putative transcriptional repressor TUP1. (602 aa)
SMAC_06134WGS project CABT00000000 data, contig 2.33. (618 aa)
SMAC_06323WGS project CABT00000000 data, contig 2.34. (234 aa)
SMAC_04644Ubiquitin carboxyl-terminal hydrolase. (860 aa)
SMAC_02119Vacuolar-sorting protein SNF8; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family. (274 aa)
Your Current Organism:
Sordaria macrospora
NCBI taxonomy Id: 771870
Other names: S. macrospora k-hell, Sordaria macrospora k-hell
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