STRINGSTRING
SMAC_02216 SMAC_02216 SMAC_08249 SMAC_08249 SMAC_00482 SMAC_00482 SMAC_04859 SMAC_04859 SMAC_00646 SMAC_00646 SMAC_00908 SMAC_00908 SMAC_01339 SMAC_01339 SMAC_01589 SMAC_01589 SMAC_01882 SMAC_01882 SMAC_06445 SMAC_06445 SMAC_04471 SMAC_04471 SMAC_04065 SMAC_04065 SMAC_04797 SMAC_04797 SMAC_06117 SMAC_06117
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SMAC_02216Putative CDC42 protein. (196 aa)
SMAC_08249WGS project CABT00000000 data, contig 2.56; Belongs to the thiolase-like superfamily. Thiolase family. (458 aa)
SMAC_00482WGS project CABT00000000 data, contig 2.1. (903 aa)
SMAC_04859WGS project CABT00000000 data, contig 2.1. (1022 aa)
SMAC_00646WGS project CABT00000000 data, contig 2.2; Belongs to the WD repeat SEC13 family. (305 aa)
SMAC_00908WGS project CABT00000000 data, contig 2.2; Belongs to the STXBP/unc-18/SEC1 family. (702 aa)
SMAC_01339Putative ZIP1 protein. (4070 aa)
SMAC_01589WGS project CABT00000000 data, contig 2.4. (504 aa)
SMAC_01882WGS project CABT00000000 data, contig 2.5. (689 aa)
SMAC_06445WGS project CABT00000000 data, contig 2.13; Belongs to the small GTPase superfamily. SAR1 family. (202 aa)
SMAC_04471Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family. (244 aa)
SMAC_04065WGS project CABT00000000 data, contig 2.17. (772 aa)
SMAC_04797WGS project CABT00000000 data, contig 2.21. (524 aa)
SMAC_06117E3 ubiquitin-protein ligase. (819 aa)
Your Current Organism:
Sordaria macrospora
NCBI taxonomy Id: 771870
Other names: S. macrospora k-hell, Sordaria macrospora k-hell
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