(11 nodes) Cytoplasmic side of plasma membrane network (Sordaria macrospora)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SMAC_00132	WGS project CABT00000000 data, contig 2.1. (124 aa)
	SMAC_07195	Putative G-protein alpha subunit. (359 aa)
	SMAC_06929	WGS project CABT00000000 data, contig 2.38. (639 aa)
	SMAC_05328	WGS project CABT00000000 data, contig 2.25. (353 aa)
	SMAC_04737	WGS project CABT00000000 data, contig 2.21. (484 aa)
	SMAC_03977	WGS project CABT00000000 data, contig 2.17. (226 aa)
	SMAC_03466	WGS project CABT00000000 data, contig 2.10. (1412 aa)
	SMAC_03398	WGS project CABT00000000 data, contig 2.10. (1119 aa)
	SMAC_01876	WGS project CABT00000000 data, contig 2.5. (358 aa)
	SMAC_07434	WGS project CABT00000000 data, contig 2.1. (645 aa)
	SMAC_00405	WGS project CABT00000000 data, contig 2.1. (1038 aa)

Your Current Organism:

Sordaria macrospora

NCBI taxonomy Id: 771870
Other names: S. macrospora k-hell, Sordaria macrospora k-hell

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SMAC_00132	SMAC_01876	F7VK90	F7VS43	WGS project CABT00000000 data, contig 2.1.	WGS project CABT00000000 data, contig 2.5.	0.995
SMAC_00132	SMAC_05328	F7VK90	F7W3U7	WGS project CABT00000000 data, contig 2.1.	WGS project CABT00000000 data, contig 2.25.	0.492
SMAC_00132	SMAC_07195	F7VK90	F7W7S8	WGS project CABT00000000 data, contig 2.1.	Putative G-protein alpha subunit.	0.492
SMAC_00405	SMAC_03977	F7VL10	F7W0H4	WGS project CABT00000000 data, contig 2.1.	WGS project CABT00000000 data, contig 2.17.	0.613
SMAC_01876	SMAC_00132	F7VS43	F7VK90	WGS project CABT00000000 data, contig 2.5.	WGS project CABT00000000 data, contig 2.1.	0.995
SMAC_01876	SMAC_05328	F7VS43	F7W3U7	WGS project CABT00000000 data, contig 2.5.	WGS project CABT00000000 data, contig 2.25.	0.933
SMAC_01876	SMAC_07195	F7VS43	F7W7S8	WGS project CABT00000000 data, contig 2.5.	Putative G-protein alpha subunit.	0.932
SMAC_03977	SMAC_00405	F7W0H4	F7VL10	WGS project CABT00000000 data, contig 2.17.	WGS project CABT00000000 data, contig 2.1.	0.613
SMAC_05328	SMAC_00132	F7W3U7	F7VK90	WGS project CABT00000000 data, contig 2.25.	WGS project CABT00000000 data, contig 2.1.	0.492
SMAC_05328	SMAC_01876	F7W3U7	F7VS43	WGS project CABT00000000 data, contig 2.25.	WGS project CABT00000000 data, contig 2.5.	0.933
SMAC_05328	SMAC_07195	F7W3U7	F7W7S8	WGS project CABT00000000 data, contig 2.25.	Putative G-protein alpha subunit.	0.905
SMAC_07195	SMAC_00132	F7W7S8	F7VK90	Putative G-protein alpha subunit.	WGS project CABT00000000 data, contig 2.1.	0.492
SMAC_07195	SMAC_01876	F7W7S8	F7VS43	Putative G-protein alpha subunit.	WGS project CABT00000000 data, contig 2.5.	0.932
SMAC_07195	SMAC_05328	F7W7S8	F7W3U7	Putative G-protein alpha subunit.	WGS project CABT00000000 data, contig 2.25.	0.905