(24 nodes) U2-type prespliceosome network (Sordaria macrospora)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SMAC_04169	WGS project CABT00000000 data, contig 2.15. (614 aa)
	SMAC_06804	WGS project CABT00000000 data, contig 2.6. (501 aa)
	SMAC_07717	WGS project CABT00000000 data, contig 2.47. (1005 aa)
	SMAC_07590	WGS project CABT00000000 data, contig 2.27; Belongs to the cytochrome P450 family. (563 aa)
	SMAC_04749	WGS project CABT00000000 data, contig 2.21. (252 aa)
	SMAC_04574	WGS project CABT00000000 data, contig 2.20. (589 aa)
	SMAC_04039	WGS project CABT00000000 data, contig 2.17. (538 aa)
	SMAC_04030	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (222 aa)
	SMAC_03936	WGS project CABT00000000 data, contig 2.17. (501 aa)
	SMAC_03799	WGS project CABT00000000 data, contig 2.16. (232 aa)
	mre2	Putative NAM8/MRE2 protein. (390 aa)
	SMAC_08834	WGS project CABT00000000 data, contig 2.13. (1209 aa)
	SMAC_02793	WGS project CABT00000000 data, contig 2.12. (853 aa)
	SMAC_03366	WGS project CABT00000000 data, contig 2.10. (287 aa)
	SMAC_05258	WGS project CABT00000000 data, contig 2.8; Belongs to the cytochrome P450 family. (562 aa)
	SMAC_05965	WGS project CABT00000000 data, contig 2.6. (253 aa)
	SMAC_02007	WGS project CABT00000000 data, contig 2.5. (263 aa)
	SMAC_02006	WGS project CABT00000000 data, contig 2.5. (135 aa)
	SMAC_00833	WGS project CABT00000000 data, contig 2.2. (229 aa)
	SMAC_00784	WGS project CABT00000000 data, contig 2.2. (745 aa)
	SMAC_04840	WGS project CABT00000000 data, contig 2.1. (257 aa)
	SMAC_00424	WGS project CABT00000000 data, contig 2.1. (1215 aa)
	SMAC_00421	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (594 aa)
	SMAC_00278	Small nuclear ribonucleoprotein G. (85 aa)

Your Current Organism:

Sordaria macrospora

NCBI taxonomy Id: 771870
Other names: S. macrospora k-hell, Sordaria macrospora k-hell

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SMAC_00278	SMAC_00421	F7VKN3	F7VL27	Small nuclear ribonucleoprotein G.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.971
SMAC_00278	SMAC_00424	F7VKN3	F7VL30	Small nuclear ribonucleoprotein G.	WGS project CABT00000000 data, contig 2.1.	0.984
SMAC_00278	SMAC_00784	F7VKN3	F7VN24	Small nuclear ribonucleoprotein G.	WGS project CABT00000000 data, contig 2.2.	0.870
SMAC_00278	SMAC_00833	F7VKN3	F7VN74	Small nuclear ribonucleoprotein G.	WGS project CABT00000000 data, contig 2.2.	0.989
SMAC_00278	SMAC_02006	F7VKN3	F7VSH6	Small nuclear ribonucleoprotein G.	WGS project CABT00000000 data, contig 2.5.	0.940
SMAC_00278	SMAC_02007	F7VKN3	F7VSH7	Small nuclear ribonucleoprotein G.	WGS project CABT00000000 data, contig 2.5.	0.940
SMAC_00278	SMAC_02793	F7VKN3	F7VXH4	Small nuclear ribonucleoprotein G.	WGS project CABT00000000 data, contig 2.12.	0.723
SMAC_00278	SMAC_03366	F7VKN3	F7VWP2	Small nuclear ribonucleoprotein G.	WGS project CABT00000000 data, contig 2.10.	0.904
SMAC_00278	SMAC_03799	F7VKN3	F7VZZ3	Small nuclear ribonucleoprotein G.	WGS project CABT00000000 data, contig 2.16.	0.949
SMAC_00278	SMAC_03936	F7VKN3	F7W0D1	Small nuclear ribonucleoprotein G.	WGS project CABT00000000 data, contig 2.17.	0.985
SMAC_00278	SMAC_04030	F7VKN3	F7W0M7	Small nuclear ribonucleoprotein G.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	0.997
SMAC_00278	SMAC_04169	F7VKN3	F7VZJ2	Small nuclear ribonucleoprotein G.	WGS project CABT00000000 data, contig 2.15.	0.986
SMAC_00278	SMAC_04574	F7VKN3	F7W1V2	Small nuclear ribonucleoprotein G.	WGS project CABT00000000 data, contig 2.20.	0.628
SMAC_00278	SMAC_04749	F7VKN3	F7W2B7	Small nuclear ribonucleoprotein G.	WGS project CABT00000000 data, contig 2.21.	0.997
SMAC_00278	SMAC_04840	F7VKN3	F7VLS1	Small nuclear ribonucleoprotein G.	WGS project CABT00000000 data, contig 2.1.	0.997
SMAC_00278	SMAC_05965	F7VKN3	F7VTF3	Small nuclear ribonucleoprotein G.	WGS project CABT00000000 data, contig 2.6.	0.998
SMAC_00278	SMAC_06804	F7VKN3	F7VSQ8	Small nuclear ribonucleoprotein G.	WGS project CABT00000000 data, contig 2.6.	0.979
SMAC_00278	SMAC_07717	F7VKN3	F7W8T7	Small nuclear ribonucleoprotein G.	WGS project CABT00000000 data, contig 2.47.	0.982
SMAC_00278	SMAC_08834	F7VKN3	F7VYN0	Small nuclear ribonucleoprotein G.	WGS project CABT00000000 data, contig 2.13.	0.986
SMAC_00278	mre2	F7VKN3	F7VZ07	Small nuclear ribonucleoprotein G.	Putative NAM8/MRE2 protein.	0.967