STRINGSTRING
SMAC_03080 SMAC_03080 SMAC_05986 SMAC_05986 SMAC_03618 SMAC_03618 SMAC_03619 SMAC_03619 SMAC_04163 SMAC_04163 SMAC_02134 SMAC_02134 SMAC_08188 SMAC_08188 SMAC_08465 SMAC_08465 SMAC_08544 SMAC_08544
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SMAC_03080WGS project CABT00000000 data, contig 2.7. (568 aa)
SMAC_05986WGS project CABT00000000 data, contig 2.6. (2377 aa)
SMAC_03618WGS project CABT00000000 data, contig 2.9. (535 aa)
SMAC_03619WGS project CABT00000000 data, contig 2.9. (2369 aa)
SMAC_04163WGS project CABT00000000 data, contig 2.15. (706 aa)
SMAC_02134WGS project CABT00000000 data, contig 2.18. (582 aa)
SMAC_08188WGS project CABT00000000 data, contig 2.53; Belongs to the glycosyl hydrolase 13 family. (486 aa)
SMAC_08465WGS project CABT00000000 data, contig 2.58. (573 aa)
SMAC_08544WGS project CABT00000000 data, contig 2.59. (629 aa)
Your Current Organism:
Sordaria macrospora
NCBI taxonomy Id: 771870
Other names: S. macrospora k-hell, Sordaria macrospora k-hell
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