(3 nodes) Transport protein particle (TRAPP) component network (Sordaria macrospora)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SMAC_07105	WGS project CABT00000000 data, contig 2.39. (252 aa)
	SMAC_07650	Trafficking protein particle complex subunit BET3. (150 aa)
	SMAC_07971	Trafficking protein particle complex subunit; Plays a key role in the late stages of endoplasmic reticulum to Golgi traffic. (241 aa)

Your Current Organism:

Sordaria macrospora

NCBI taxonomy Id: 771870
Other names: S. macrospora k-hell, Sordaria macrospora k-hell

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SMAC_07105	SMAC_07650	F7W7J7	F7W5L9	WGS project CABT00000000 data, contig 2.39.	Trafficking protein particle complex subunit BET3.	0.991
SMAC_07105	SMAC_07971	F7W7J7	F7W920	WGS project CABT00000000 data, contig 2.39.	Trafficking protein particle complex subunit; Plays a key role in the late stages of endoplasmic reticulum to Golgi traffic.	0.983
SMAC_07650	SMAC_07105	F7W5L9	F7W7J7	Trafficking protein particle complex subunit BET3.	WGS project CABT00000000 data, contig 2.39.	0.991
SMAC_07650	SMAC_07971	F7W5L9	F7W920	Trafficking protein particle complex subunit BET3.	Trafficking protein particle complex subunit; Plays a key role in the late stages of endoplasmic reticulum to Golgi traffic.	0.999
SMAC_07971	SMAC_07105	F7W920	F7W7J7	Trafficking protein particle complex subunit; Plays a key role in the late stages of endoplasmic reticulum to Golgi traffic.	WGS project CABT00000000 data, contig 2.39.	0.983
SMAC_07971	SMAC_07650	F7W920	F7W5L9	Trafficking protein particle complex subunit; Plays a key role in the late stages of endoplasmic reticulum to Golgi traffic.	Trafficking protein particle complex subunit BET3.	0.999