STRINGSTRING
SMAC_03407 SMAC_03407 SMAC_01405 SMAC_01405 SMAC_06414 SMAC_06414 SMAC_08890 SMAC_08890 SMAC_05377 SMAC_05377 SMAC_06189 SMAC_06189 SMAC_03838 SMAC_03838 SMAC_02403 SMAC_02403 SMAC_02402 SMAC_02402 SMAC_04470 SMAC_04470 SMAC_02635 SMAC_02635 SMAC_03471 SMAC_03471 SMAC_03415 SMAC_03415 SMAC_05400 SMAC_05400 SMAC_05777 SMAC_05777
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SMAC_03407WGS project CABT00000000 data, contig 2.10. (881 aa)
SMAC_01405WGS project CABT00000000 data, contig 2.4. (495 aa)
SMAC_06414WGS project CABT00000000 data, contig 2.35. (653 aa)
SMAC_08890WGS project CABT00000000 data, contig 2.68. (342 aa)
SMAC_05377WGS project CABT00000000 data, contig 2.6. (565 aa)
SMAC_06189Vacuolar protein sorting-associated protein 27; Component of the ESCRT-0 complex which is the sorting receptor for ubiquitinated cargo proteins at the multivesicular body (MVB) and recruits ESCRT-I to the MVB outer membrane. (722 aa)
SMAC_03838WGS project CABT00000000 data, contig 2.16. (447 aa)
SMAC_02403WGS project CABT00000000 data, contig 2.3. (753 aa)
SMAC_02402WGS project CABT00000000 data, contig 2.3. (636 aa)
SMAC_04470WGS project CABT00000000 data, contig 2.14. (392 aa)
SMAC_02635WGS project CABT00000000 data, contig 2.11. (723 aa)
SMAC_03471WGS project CABT00000000 data, contig 2.10. (721 aa)
SMAC_03415WGS project CABT00000000 data, contig 2.10. (592 aa)
SMAC_05400WGS project CABT00000000 data, contig 2.6. (1053 aa)
SMAC_05777WGS project CABT00000000 data, contig 2.6. (633 aa)
Your Current Organism:
Sordaria macrospora
NCBI taxonomy Id: 771870
Other names: S. macrospora k-hell, Sordaria macrospora k-hell
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