(18 nodes) Glycosyl hydrolase, all-beta network (Sordaria macrospora)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SMAC_05780	WGS project CABT00000000 data, contig 2.6. (1233 aa)
	SMAC_03672	WGS project CABT00000000 data, contig 2.9. (774 aa)
	SMAC_03618	WGS project CABT00000000 data, contig 2.9. (535 aa)
	SMAC_03542	WGS project CABT00000000 data, contig 2.9. (673 aa)
	SMAC_03080	WGS project CABT00000000 data, contig 2.7. (568 aa)
	SMAC_08332	WGS project CABT00000000 data, contig 2.7; Belongs to the glycosyl hydrolase 31 family. (914 aa)
	SMAC_00806	WGS project CABT00000000 data, contig 2.2; Belongs to the glycosyl hydrolase 30 family. (504 aa)
	SMAC_09611	WGS project CABT00000000 data, contig 2.109. (484 aa)
	SMAC_08660	WGS project CABT00000000 data, contig 2.61; Belongs to the glycosyl hydrolase 31 family. (869 aa)
	SMAC_08544	WGS project CABT00000000 data, contig 2.59. (629 aa)
	SMAC_08465	WGS project CABT00000000 data, contig 2.58. (573 aa)
	SMAC_08406	WGS project CABT00000000 data, contig 2.57. (1448 aa)
	SMAC_08188	WGS project CABT00000000 data, contig 2.53; Belongs to the glycosyl hydrolase 13 family. (486 aa)
	SMAC_07359	WGS project CABT00000000 data, contig 2.45; Belongs to the glycosyl hydrolase 30 family. (482 aa)
	SMAC_02134	WGS project CABT00000000 data, contig 2.18. (582 aa)
	SMAC_04163	WGS project CABT00000000 data, contig 2.15. (706 aa)
	SMAC_04391	WGS project CABT00000000 data, contig 2.14; Belongs to the glycosyl hydrolase 31 family. (996 aa)
	SMAC_08837	WGS project CABT00000000 data, contig 2.13; Belongs to the glycosyl hydrolase 30 family. (510 aa)

Your Current Organism:

Sordaria macrospora

NCBI taxonomy Id: 771870
Other names: S. macrospora k-hell, Sordaria macrospora k-hell

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SMAC_02134	SMAC_03080	F7W125	F7VUA3	WGS project CABT00000000 data, contig 2.18.	WGS project CABT00000000 data, contig 2.7.	0.903
SMAC_02134	SMAC_03618	F7W125	F7VVP6	WGS project CABT00000000 data, contig 2.18.	WGS project CABT00000000 data, contig 2.9.	0.910
SMAC_02134	SMAC_04163	F7W125	F7VZI6	WGS project CABT00000000 data, contig 2.18.	WGS project CABT00000000 data, contig 2.15.	0.607
SMAC_02134	SMAC_05780	F7W125	F7VT80	WGS project CABT00000000 data, contig 2.18.	WGS project CABT00000000 data, contig 2.6.	0.918
SMAC_02134	SMAC_08188	F7W125	F7W9N0	WGS project CABT00000000 data, contig 2.18.	WGS project CABT00000000 data, contig 2.53; Belongs to the glycosyl hydrolase 13 family.	0.905
SMAC_02134	SMAC_08332	F7W125	F7VTK7	WGS project CABT00000000 data, contig 2.18.	WGS project CABT00000000 data, contig 2.7; Belongs to the glycosyl hydrolase 31 family.	0.918
SMAC_02134	SMAC_08465	F7W125	F7WA61	WGS project CABT00000000 data, contig 2.18.	WGS project CABT00000000 data, contig 2.58.	0.915
SMAC_02134	SMAC_08544	F7W125	F7WA98	WGS project CABT00000000 data, contig 2.18.	WGS project CABT00000000 data, contig 2.59.	0.903
SMAC_02134	SMAC_08660	F7W125	F7WAI1	WGS project CABT00000000 data, contig 2.18.	WGS project CABT00000000 data, contig 2.61; Belongs to the glycosyl hydrolase 31 family.	0.918
SMAC_03080	SMAC_02134	F7VUA3	F7W125	WGS project CABT00000000 data, contig 2.7.	WGS project CABT00000000 data, contig 2.18.	0.903
SMAC_03080	SMAC_03618	F7VUA3	F7VVP6	WGS project CABT00000000 data, contig 2.7.	WGS project CABT00000000 data, contig 2.9.	0.910
SMAC_03080	SMAC_04163	F7VUA3	F7VZI6	WGS project CABT00000000 data, contig 2.7.	WGS project CABT00000000 data, contig 2.15.	0.607
SMAC_03080	SMAC_05780	F7VUA3	F7VT80	WGS project CABT00000000 data, contig 2.7.	WGS project CABT00000000 data, contig 2.6.	0.918
SMAC_03080	SMAC_08188	F7VUA3	F7W9N0	WGS project CABT00000000 data, contig 2.7.	WGS project CABT00000000 data, contig 2.53; Belongs to the glycosyl hydrolase 13 family.	0.903
SMAC_03080	SMAC_08332	F7VUA3	F7VTK7	WGS project CABT00000000 data, contig 2.7.	WGS project CABT00000000 data, contig 2.7; Belongs to the glycosyl hydrolase 31 family.	0.918
SMAC_03080	SMAC_08465	F7VUA3	F7WA61	WGS project CABT00000000 data, contig 2.7.	WGS project CABT00000000 data, contig 2.58.	0.914
SMAC_03080	SMAC_08544	F7VUA3	F7WA98	WGS project CABT00000000 data, contig 2.7.	WGS project CABT00000000 data, contig 2.59.	0.903
SMAC_03080	SMAC_08660	F7VUA3	F7WAI1	WGS project CABT00000000 data, contig 2.7.	WGS project CABT00000000 data, contig 2.61; Belongs to the glycosyl hydrolase 31 family.	0.918
SMAC_03618	SMAC_02134	F7VVP6	F7W125	WGS project CABT00000000 data, contig 2.9.	WGS project CABT00000000 data, contig 2.18.	0.910
SMAC_03618	SMAC_03080	F7VVP6	F7VUA3	WGS project CABT00000000 data, contig 2.9.	WGS project CABT00000000 data, contig 2.7.	0.910