STRINGSTRING
SMAC_03435 SMAC_03435 SMAC_03311 SMAC_03311 SMAC_06980 SMAC_06980 SMAC_05694 SMAC_05694 SMAC_04833 SMAC_04833 SMAC_06055 SMAC_06055 SMAC_06243 SMAC_06243 SMAC_00804 SMAC_00804 SMAC_01491 SMAC_01491
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SMAC_03435WGS project CABT00000000 data, contig 2.10. (953 aa)
SMAC_03311Rhamnogalacturonate lyase; Belongs to the polysaccharide lyase 4 family. (542 aa)
SMAC_06980WGS project CABT00000000 data, contig 2.29. (1024 aa)
SMAC_05694WGS project CABT00000000 data, contig 2.30. (390 aa)
SMAC_04833Glucose-6-phosphate 1-epimerase; Catalyzes the interconversion between the alpha and beta anomers from at least three hexose 6-phosphate sugars (Glc6P, Gal6P, and Man6P). (346 aa)
SMAC_06055WGS project CABT00000000 data, contig 2.32. (351 aa)
SMAC_06243WGS project CABT00000000 data, contig 2.3. (450 aa)
SMAC_00804WGS project CABT00000000 data, contig 2.2. (704 aa)
SMAC_01491WGS project CABT00000000 data, contig 2.4; Belongs to the glycosyl hydrolase 2 family. (1071 aa)
Your Current Organism:
Sordaria macrospora
NCBI taxonomy Id: 771870
Other names: S. macrospora k-hell, Sordaria macrospora k-hell
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