STRINGSTRING
SMAC_04873 SMAC_04873 SMAC_08336 SMAC_08336 SMAC_08282 SMAC_08282 SMAC_01016 SMAC_01016 SMAC_08337 SMAC_08337 SMAC_02749 SMAC_02749 SMAC_02871 SMAC_02871 SMAC_03872 SMAC_03872 SMAC_03873 SMAC_03873 SMAC_05367 SMAC_05367 SMAC_07461 SMAC_07461 SMAC_00918 SMAC_00918 SMAC_04875 SMAC_04875 SMAC_00561 SMAC_00561
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SMAC_04873WGS project CABT00000000 data, contig 2.1. (1296 aa)
SMAC_08336WGS project CABT00000000 data, contig 2.7. (432 aa)
SMAC_08282WGS project CABT00000000 data, contig 2.56. (278 aa)
SMAC_01016WGS project CABT00000000 data, contig 2.2. (604 aa)
SMAC_08337WGS project CABT00000000 data, contig 2.7. (220 aa)
SMAC_02749WGS project CABT00000000 data, contig 2.11. (331 aa)
SMAC_02871Lysophospholipase. (634 aa)
SMAC_03872WGS project CABT00000000 data, contig 2.16. (253 aa)
SMAC_03873WGS project CABT00000000 data, contig 2.16. (483 aa)
SMAC_05367WGS project CABT00000000 data, contig 2.25; Belongs to the membrane-bound acyltransferase family. (607 aa)
SMAC_07461WGS project CABT00000000 data, contig 2.46. (647 aa)
SMAC_00918Lysophospholipase. (845 aa)
SMAC_04875WGS project CABT00000000 data, contig 2.1. (573 aa)
SMAC_00561WGS project CABT00000000 data, contig 2.1. (355 aa)
Your Current Organism:
Sordaria macrospora
NCBI taxonomy Id: 771870
Other names: S. macrospora k-hell, Sordaria macrospora k-hell
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