(17 nodes) Sphingolipid metabolism network (Sordaria macrospora)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SMAC_00102	WGS project CABT00000000 data, contig 2.1. (427 aa)
	SMAC_00481	WGS project CABT00000000 data, contig 2.1. (202 aa)
	SMAC_01184	WGS project CABT00000000 data, contig 2.2. (565 aa)
	SMAC_06752	WGS project CABT00000000 data, contig 2.3. (577 aa)
	SMAC_01491	WGS project CABT00000000 data, contig 2.4; Belongs to the glycosyl hydrolase 2 family. (1071 aa)
	SMAC_01883	WGS project CABT00000000 data, contig 2.5. (663 aa)
	SMAC_05999	WGS project CABT00000000 data, contig 2.6. (512 aa)
	SMAC_03235	Neutral ceramidase. (835 aa)
	SMAC_03191	WGS project CABT00000000 data, contig 2.7. (541 aa)
	SMAC_02964	WGS project CABT00000000 data, contig 2.12. (541 aa)
	SMAC_06713	WGS project CABT00000000 data, contig 2.13. (352 aa)
	SMAC_03841	Neutral ceramidase. (774 aa)
	SMAC_05919	WGS project CABT00000000 data, contig 2.24. (541 aa)
	SMAC_05550	Sphingolipid delta(4)-desaturase; Delta(4)-fatty-acid desaturase which introduces a double bond at the 4-position in the long-chain base (LCB) of ceramides. (395 aa)
	SMAC_06980	WGS project CABT00000000 data, contig 2.29. (1024 aa)
	SMAC_07238	WGS project CABT00000000 data, contig 2.42. (580 aa)
	SMAC_08886	WGS project CABT00000000 data, contig 2.68; Belongs to the sterol desaturase family. (382 aa)

Your Current Organism:

Sordaria macrospora

NCBI taxonomy Id: 771870
Other names: S. macrospora k-hell, Sordaria macrospora k-hell

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SMAC_00102	SMAC_00481	F7VK60	F7VL87	WGS project CABT00000000 data, contig 2.1.	WGS project CABT00000000 data, contig 2.1.	0.945
SMAC_00102	SMAC_01184	F7VK60	F7VMI0	WGS project CABT00000000 data, contig 2.1.	WGS project CABT00000000 data, contig 2.2.	0.938
SMAC_00102	SMAC_01883	F7VK60	F7VS50	WGS project CABT00000000 data, contig 2.1.	WGS project CABT00000000 data, contig 2.5.	0.451
SMAC_00102	SMAC_02964	F7VK60	F7VXZ9	WGS project CABT00000000 data, contig 2.1.	WGS project CABT00000000 data, contig 2.12.	0.410
SMAC_00102	SMAC_03191	F7VK60	F7VTZ2	WGS project CABT00000000 data, contig 2.1.	WGS project CABT00000000 data, contig 2.7.	0.407
SMAC_00102	SMAC_03235	F7VK60	F7VTU9	WGS project CABT00000000 data, contig 2.1.	Neutral ceramidase.	0.921
SMAC_00102	SMAC_03841	F7VK60	F7W035	WGS project CABT00000000 data, contig 2.1.	Neutral ceramidase.	0.921
SMAC_00102	SMAC_05550	F7VK60	F7W418	WGS project CABT00000000 data, contig 2.1.	Sphingolipid delta(4)-desaturase; Delta(4)-fatty-acid desaturase which introduces a double bond at the 4-position in the long-chain base (LCB) of ceramides.	0.946
SMAC_00102	SMAC_05919	F7VK60	F7W3H9	WGS project CABT00000000 data, contig 2.1.	WGS project CABT00000000 data, contig 2.24.	0.446
SMAC_00102	SMAC_05999	F7VK60	F7VTJ1	WGS project CABT00000000 data, contig 2.1.	WGS project CABT00000000 data, contig 2.6.	0.900
SMAC_00102	SMAC_06713	F7VK60	F7VYE8	WGS project CABT00000000 data, contig 2.1.	WGS project CABT00000000 data, contig 2.13.	0.937
SMAC_00102	SMAC_07238	F7VK60	F7W827	WGS project CABT00000000 data, contig 2.1.	WGS project CABT00000000 data, contig 2.42.	0.928
SMAC_00102	SMAC_08886	F7VK60	F7WB04	WGS project CABT00000000 data, contig 2.1.	WGS project CABT00000000 data, contig 2.68; Belongs to the sterol desaturase family.	0.931
SMAC_00481	SMAC_00102	F7VL87	F7VK60	WGS project CABT00000000 data, contig 2.1.	WGS project CABT00000000 data, contig 2.1.	0.945
SMAC_00481	SMAC_01184	F7VL87	F7VMI0	WGS project CABT00000000 data, contig 2.1.	WGS project CABT00000000 data, contig 2.2.	0.956
SMAC_00481	SMAC_01883	F7VL87	F7VS50	WGS project CABT00000000 data, contig 2.1.	WGS project CABT00000000 data, contig 2.5.	0.621
SMAC_00481	SMAC_02964	F7VL87	F7VXZ9	WGS project CABT00000000 data, contig 2.1.	WGS project CABT00000000 data, contig 2.12.	0.556
SMAC_00481	SMAC_03235	F7VL87	F7VTU9	WGS project CABT00000000 data, contig 2.1.	Neutral ceramidase.	0.941
SMAC_00481	SMAC_03841	F7VL87	F7W035	WGS project CABT00000000 data, contig 2.1.	Neutral ceramidase.	0.941
SMAC_00481	SMAC_05550	F7VL87	F7W418	WGS project CABT00000000 data, contig 2.1.	Sphingolipid delta(4)-desaturase; Delta(4)-fatty-acid desaturase which introduces a double bond at the 4-position in the long-chain base (LCB) of ceramides.	0.940