Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AFG34362.1 | AFG34380.1 | Ferpe_0211 | Ferpe_0231 | Hypothetical protein. | PFAM: Single-strand binding protein family. | 0.799 |
| AFG34362.1 | AFG34384.1 | Ferpe_0211 | Ferpe_0235 | Hypothetical protein. | PFAM: DNA polymerase III, delta subunit. | 0.977 |
| AFG34362.1 | AFG34387.1 | Ferpe_0211 | Ferpe_0238 | Hypothetical protein. | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. | 0.714 |
| AFG34362.1 | AFG35153.1 | Ferpe_0211 | Ferpe_1046 | Hypothetical protein. | Exonuclease, DNA polymerase III, epsilon subunit family; PFAM: Exonuclease. | 0.977 |
| AFG34362.1 | AFG35162.1 | Ferpe_0211 | Ferpe_1055 | Hypothetical protein. | Hypothetical protein. | 0.754 |
| AFG34362.1 | AFG35199.1 | Ferpe_0211 | Ferpe_1094 | Hypothetical protein. | PFAM: Bacterial DNA polymerase III alpha subunit. | 0.990 |
| AFG34362.1 | AFG35667.1 | Ferpe_0211 | Ferpe_1608 | Hypothetical protein. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.982 |
| AFG34362.1 | dnaG | Ferpe_0211 | Ferpe_0097 | Hypothetical protein. | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | 0.503 |
| AFG34362.1 | dnaX | Ferpe_0211 | Ferpe_0774 | Hypothetical protein. | DNA polymerase III, subunit gamma/tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.920 |
| AFG34362.1 | polC | Ferpe_0211 | Ferpe_1920 | Hypothetical protein. | DNA polymerase III, alpha chain; Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.923 |
| AFG34380.1 | AFG34362.1 | Ferpe_0231 | Ferpe_0211 | PFAM: Single-strand binding protein family. | Hypothetical protein. | 0.799 |
| AFG34380.1 | AFG34387.1 | Ferpe_0231 | Ferpe_0238 | PFAM: Single-strand binding protein family. | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. | 0.703 |
| AFG34380.1 | AFG34789.1 | Ferpe_0231 | Ferpe_0661 | PFAM: Single-strand binding protein family. | Exonuclease RecJ; PFAM: DHH family; DHHA1 domain. | 0.590 |
| AFG34380.1 | AFG35153.1 | Ferpe_0231 | Ferpe_1046 | PFAM: Single-strand binding protein family. | Exonuclease, DNA polymerase III, epsilon subunit family; PFAM: Exonuclease. | 0.404 |
| AFG34380.1 | AFG35199.1 | Ferpe_0231 | Ferpe_1094 | PFAM: Single-strand binding protein family. | PFAM: Bacterial DNA polymerase III alpha subunit. | 0.895 |
| AFG34380.1 | AFG35667.1 | Ferpe_0231 | Ferpe_1608 | PFAM: Single-strand binding protein family. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.604 |
| AFG34380.1 | dnaG | Ferpe_0231 | Ferpe_0097 | PFAM: Single-strand binding protein family. | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | 0.525 |
| AFG34380.1 | dnaX | Ferpe_0231 | Ferpe_0774 | PFAM: Single-strand binding protein family. | DNA polymerase III, subunit gamma/tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.768 |
| AFG34380.1 | priA | Ferpe_0231 | Ferpe_1823 | PFAM: Single-strand binding protein family. | Replication restart DNA helicase PriA; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. | 0.841 |
| AFG34384.1 | AFG34362.1 | Ferpe_0235 | Ferpe_0211 | PFAM: DNA polymerase III, delta subunit. | Hypothetical protein. | 0.977 |
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