STRINGSTRING
AFG34436.1 AFG34436.1 AFG35062.1 AFG35062.1 AFG35630.1 AFG35630.1 AFG34260.1 AFG34260.1 AFG34333.1 AFG34333.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
AFG34436.1RNA polymerase, sigma 30 subunit, SigH; PFAM: Sigma-70, region 4; Sigma-70 region 2; Belongs to the sigma-70 factor family. (207 aa)
AFG35062.1RNA polymerase, sigma-24 subunit, RpoE; PFAM: Sigma-70, region 4; Sigma-70 region 2; Belongs to the sigma-70 factor family. ECF subfamily. (221 aa)
AFG35630.1DNA-directed RNA polymerase specialized sigma subunit, sigma24; PFAM: Sigma-54, DNA binding domain. (304 aa)
AFG34260.1RNA polymerase sigma factor, sigma-70 family; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (371 aa)
AFG34333.1RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG; PFAM: Sigma-70, region 4; Sigma-70 region 3; Sigma-70 region 2; Belongs to the sigma-70 factor family. (251 aa)
Your Current Organism:
Fervidobacterium pennivorans
NCBI taxonomy Id: 771875
Other names: F. pennivorans DSM 9078, Fervidobacterium pennivorans DSM 9078, Fervidobacterium pennivorans str. DSM 9078, Fervidobacterium pennivorans strain DSM 9078
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