STRINGSTRING
csrA csrA AFG36053.1 AFG36053.1 AFG36009.1 AFG36009.1 AFG35883.1 AFG35883.1 rnhB rnhB rny rny AFG35094.1 AFG35094.1 pnp pnp AFG34246.1 AFG34246.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
csrACarbon storage regulator CsrA; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. (93 aa)
AFG36053.1Enolase superfamily enzyme related to L-alanine-DL-glutamate epimerase; PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain. (342 aa)
AFG36009.1Uncharacterized stress-induced protein; PFAM: YicC-like family, N-terminal region; Domain of unknown function (DUF1732). (291 aa)
AFG35883.1PFAM: Exonuclease VII, large subunit; Belongs to the XseA family. (493 aa)
rnhBRibonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (251 aa)
rnyHypothetical protein; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family. (517 aa)
AFG35094.1Maltose-binding periplasmic protein; PFAM: Bacterial extracellular solute-binding protein. (395 aa)
pnpPolyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. (694 aa)
AFG34246.1Ribonuclease HI; PFAM: RNase H. (160 aa)
Your Current Organism:
Fervidobacterium pennivorans
NCBI taxonomy Id: 771875
Other names: F. pennivorans DSM 9078, Fervidobacterium pennivorans DSM 9078, Fervidobacterium pennivorans str. DSM 9078, Fervidobacterium pennivorans strain DSM 9078
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