(12 nodes) Mixed, incl. Ionotropic glutamate receptor, and Guanylate kinase-like domain network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC100178840	Uncharacterized protein. (600 aa)
	F6RYH5_CIOIN	Uncharacterized protein. (814 aa)
	F6PLQ2_CIOIN	Uncharacterized protein; Belongs to the MAGUK family. (971 aa)
	F6X3Y8_CIOIN	Uncharacterized protein. (150 aa)
	F6W4K8_CIOIN	Uncharacterized protein. (835 aa)
	LOC100176875	Hippocalcin-like protein 4. (202 aa)
	LOC100184418	Uncharacterized protein. (95 aa)
	LOC100184110	Hippocalcin-like protein 1. (194 aa)
	LOC100176472	Uncharacterized protein. (192 aa)
	H2XJZ0_CIOIN	Guanylate kinase-like domain-containing protein. (80 aa)
	H2XLW2_CIOIN	Uncharacterized protein; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family. (304 aa)
	H2Y004_CIOIN	PBPe domain-containing protein; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family. (232 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6PLQ2_CIOIN	F6W4K8_CIOIN	ENSCINP00000009884	ENSCINP00000016355	Uncharacterized protein; Belongs to the MAGUK family.	Uncharacterized protein.	0.566
F6PLQ2_CIOIN	F6X3Y8_CIOIN	ENSCINP00000009884	ENSCINP00000015960	Uncharacterized protein; Belongs to the MAGUK family.	Uncharacterized protein.	0.458
F6PLQ2_CIOIN	H2XJZ0_CIOIN	ENSCINP00000009884	ENSCINP00000029972	Uncharacterized protein; Belongs to the MAGUK family.	Guanylate kinase-like domain-containing protein.	0.873
F6PLQ2_CIOIN	H2Y004_CIOIN	ENSCINP00000009884	ENSCINP00000035238	Uncharacterized protein; Belongs to the MAGUK family.	PBPe domain-containing protein; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	0.820
F6PLQ2_CIOIN	LOC100176472	ENSCINP00000009884	ENSCINP00000027731	Uncharacterized protein; Belongs to the MAGUK family.	Uncharacterized protein.	0.492
F6PLQ2_CIOIN	LOC100176875	ENSCINP00000009884	ENSCINP00000017811	Uncharacterized protein; Belongs to the MAGUK family.	Hippocalcin-like protein 4.	0.405
F6PLQ2_CIOIN	LOC100184110	ENSCINP00000009884	ENSCINP00000025090	Uncharacterized protein; Belongs to the MAGUK family.	Hippocalcin-like protein 1.	0.492
F6PLQ2_CIOIN	LOC100184418	ENSCINP00000009884	ENSCINP00000019667	Uncharacterized protein; Belongs to the MAGUK family.	Uncharacterized protein.	0.890
F6RYH5_CIOIN	H2XJZ0_CIOIN	ENSCINP00000008326	ENSCINP00000029972	Uncharacterized protein.	Guanylate kinase-like domain-containing protein.	0.873
F6RYH5_CIOIN	H2Y004_CIOIN	ENSCINP00000008326	ENSCINP00000035238	Uncharacterized protein.	PBPe domain-containing protein; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	0.558
F6RYH5_CIOIN	LOC100178840	ENSCINP00000008326	ENSCINP00000002961	Uncharacterized protein.	Uncharacterized protein.	0.581
F6RYH5_CIOIN	LOC100184418	ENSCINP00000008326	ENSCINP00000019667	Uncharacterized protein.	Uncharacterized protein.	0.682
F6W4K8_CIOIN	F6PLQ2_CIOIN	ENSCINP00000016355	ENSCINP00000009884	Uncharacterized protein.	Uncharacterized protein; Belongs to the MAGUK family.	0.566
F6W4K8_CIOIN	F6X3Y8_CIOIN	ENSCINP00000016355	ENSCINP00000015960	Uncharacterized protein.	Uncharacterized protein.	0.906
F6W4K8_CIOIN	H2XLW2_CIOIN	ENSCINP00000016355	ENSCINP00000030644	Uncharacterized protein.	Uncharacterized protein; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	0.910
F6W4K8_CIOIN	H2Y004_CIOIN	ENSCINP00000016355	ENSCINP00000035238	Uncharacterized protein.	PBPe domain-containing protein; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	0.925
F6W4K8_CIOIN	LOC100184418	ENSCINP00000016355	ENSCINP00000019667	Uncharacterized protein.	Uncharacterized protein.	0.913
F6X3Y8_CIOIN	F6PLQ2_CIOIN	ENSCINP00000015960	ENSCINP00000009884	Uncharacterized protein.	Uncharacterized protein; Belongs to the MAGUK family.	0.458
F6X3Y8_CIOIN	F6W4K8_CIOIN	ENSCINP00000015960	ENSCINP00000016355	Uncharacterized protein.	Uncharacterized protein.	0.906
F6X3Y8_CIOIN	H2XLW2_CIOIN	ENSCINP00000015960	ENSCINP00000030644	Uncharacterized protein.	Uncharacterized protein; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	0.900