(5 nodes) Intraciliary retrograde transport network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC100185043	Uncharacterized protein. (495 aa)
	F7AAA1_CIOIN	Uncharacterized protein. (361 aa)
	LOC100185458	Uncharacterized protein LOC100185458. (315 aa)
	LOC100180883	Tctex1 domain-containing protein 2-like. (127 aa)
	LOC100187521	Uncharacterized protein. (348 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F7AAA1_CIOIN	LOC100180883	ENSCINP00000004235	ENSCINP00000016129	Uncharacterized protein.	Tctex1 domain-containing protein 2-like.	0.838
F7AAA1_CIOIN	LOC100185043	ENSCINP00000004235	ENSCINP00000000501	Uncharacterized protein.	Uncharacterized protein.	0.953
F7AAA1_CIOIN	LOC100185458	ENSCINP00000004235	ENSCINP00000012560	Uncharacterized protein.	Uncharacterized protein LOC100185458.	0.835
F7AAA1_CIOIN	LOC100187521	ENSCINP00000004235	ENSCINP00000022791	Uncharacterized protein.	Uncharacterized protein.	0.958
LOC100180883	F7AAA1_CIOIN	ENSCINP00000016129	ENSCINP00000004235	Tctex1 domain-containing protein 2-like.	Uncharacterized protein.	0.838
LOC100180883	LOC100185043	ENSCINP00000016129	ENSCINP00000000501	Tctex1 domain-containing protein 2-like.	Uncharacterized protein.	0.876
LOC100180883	LOC100185458	ENSCINP00000016129	ENSCINP00000012560	Tctex1 domain-containing protein 2-like.	Uncharacterized protein LOC100185458.	0.793
LOC100180883	LOC100187521	ENSCINP00000016129	ENSCINP00000022791	Tctex1 domain-containing protein 2-like.	Uncharacterized protein.	0.920
LOC100185043	F7AAA1_CIOIN	ENSCINP00000000501	ENSCINP00000004235	Uncharacterized protein.	Uncharacterized protein.	0.953
LOC100185043	LOC100180883	ENSCINP00000000501	ENSCINP00000016129	Uncharacterized protein.	Tctex1 domain-containing protein 2-like.	0.876
LOC100185043	LOC100185458	ENSCINP00000000501	ENSCINP00000012560	Uncharacterized protein.	Uncharacterized protein LOC100185458.	0.846
LOC100185043	LOC100187521	ENSCINP00000000501	ENSCINP00000022791	Uncharacterized protein.	Uncharacterized protein.	0.945
LOC100185458	F7AAA1_CIOIN	ENSCINP00000012560	ENSCINP00000004235	Uncharacterized protein LOC100185458.	Uncharacterized protein.	0.835
LOC100185458	LOC100180883	ENSCINP00000012560	ENSCINP00000016129	Uncharacterized protein LOC100185458.	Tctex1 domain-containing protein 2-like.	0.793
LOC100185458	LOC100185043	ENSCINP00000012560	ENSCINP00000000501	Uncharacterized protein LOC100185458.	Uncharacterized protein.	0.846
LOC100185458	LOC100187521	ENSCINP00000012560	ENSCINP00000022791	Uncharacterized protein LOC100185458.	Uncharacterized protein.	0.842
LOC100187521	F7AAA1_CIOIN	ENSCINP00000022791	ENSCINP00000004235	Uncharacterized protein.	Uncharacterized protein.	0.958
LOC100187521	LOC100180883	ENSCINP00000022791	ENSCINP00000016129	Uncharacterized protein.	Tctex1 domain-containing protein 2-like.	0.920
LOC100187521	LOC100185043	ENSCINP00000022791	ENSCINP00000000501	Uncharacterized protein.	Uncharacterized protein.	0.945
LOC100187521	LOC100185458	ENSCINP00000022791	ENSCINP00000012560	Uncharacterized protein.	Uncharacterized protein LOC100185458.	0.842