(5 nodes) Mixed, incl. Domain of unknown function (DUF4541), and Regulation of flagellated sperm motility network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F6PR08_CIOIN	Uncharacterized protein. (310 aa)
	F6YAM0_CIOIN	Uncharacterized protein. (861 aa)
	calx	Calaxin. (203 aa)
	LOC100187227	Uncharacterized protein C5orf49. (147 aa)
	LOC100182799	Uncharacterized protein. (144 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6PR08_CIOIN	F6YAM0_CIOIN	ENSCINP00000013095	ENSCINP00000014178	Uncharacterized protein.	Uncharacterized protein.	0.647
F6PR08_CIOIN	LOC100182799	ENSCINP00000013095	ENSCINP00000033672	Uncharacterized protein.	Uncharacterized protein.	0.641
F6PR08_CIOIN	LOC100187227	ENSCINP00000013095	ENSCINP00000029836	Uncharacterized protein.	Uncharacterized protein C5orf49.	0.556
F6PR08_CIOIN	calx	ENSCINP00000013095	ENSCINP00000015983	Uncharacterized protein.	Calaxin.	0.635
F6YAM0_CIOIN	F6PR08_CIOIN	ENSCINP00000014178	ENSCINP00000013095	Uncharacterized protein.	Uncharacterized protein.	0.647
F6YAM0_CIOIN	LOC100182799	ENSCINP00000014178	ENSCINP00000033672	Uncharacterized protein.	Uncharacterized protein.	0.765
F6YAM0_CIOIN	LOC100187227	ENSCINP00000014178	ENSCINP00000029836	Uncharacterized protein.	Uncharacterized protein C5orf49.	0.530
F6YAM0_CIOIN	calx	ENSCINP00000014178	ENSCINP00000015983	Uncharacterized protein.	Calaxin.	0.785
LOC100182799	F6PR08_CIOIN	ENSCINP00000033672	ENSCINP00000013095	Uncharacterized protein.	Uncharacterized protein.	0.641
LOC100182799	F6YAM0_CIOIN	ENSCINP00000033672	ENSCINP00000014178	Uncharacterized protein.	Uncharacterized protein.	0.765
LOC100182799	LOC100187227	ENSCINP00000033672	ENSCINP00000029836	Uncharacterized protein.	Uncharacterized protein C5orf49.	0.794
LOC100182799	calx	ENSCINP00000033672	ENSCINP00000015983	Uncharacterized protein.	Calaxin.	0.792
LOC100187227	F6PR08_CIOIN	ENSCINP00000029836	ENSCINP00000013095	Uncharacterized protein C5orf49.	Uncharacterized protein.	0.556
LOC100187227	F6YAM0_CIOIN	ENSCINP00000029836	ENSCINP00000014178	Uncharacterized protein C5orf49.	Uncharacterized protein.	0.530
LOC100187227	LOC100182799	ENSCINP00000029836	ENSCINP00000033672	Uncharacterized protein C5orf49.	Uncharacterized protein.	0.794
LOC100187227	calx	ENSCINP00000029836	ENSCINP00000015983	Uncharacterized protein C5orf49.	Calaxin.	0.548
calx	F6PR08_CIOIN	ENSCINP00000015983	ENSCINP00000013095	Calaxin.	Uncharacterized protein.	0.635
calx	F6YAM0_CIOIN	ENSCINP00000015983	ENSCINP00000014178	Calaxin.	Uncharacterized protein.	0.785
calx	LOC100182799	ENSCINP00000015983	ENSCINP00000033672	Calaxin.	Uncharacterized protein.	0.792
calx	LOC100187227	ENSCINP00000015983	ENSCINP00000029836	Calaxin.	Uncharacterized protein C5orf49.	0.548