10 items (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:
	F6U2M6_CIOIN	PUA domain-containing protein. (528 aa)
	F6R982_CIOIN	WD_REPEATS_REGION domain-containing protein. (433 aa)
	LOC100181113	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs. (198 aa)
	F6VH72_CIOIN	CS domain-containing protein. (441 aa)
	LOC100187276	Telomerase reverse transcriptase; Telomerase is a ribonucleoprotein enzyme essential for the replication of chromosome termini in most eukaryotes. It elongates telomeres. It is a reverse transcriptase that adds simple sequence repeats to chromosome ends by copying a template sequence within the RNA component of the enzyme. (904 aa)
	F6WN37_CIOIN	Uncharacterized protein. (114 aa)
	F7BHB8_CIOIN	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (257 aa)
	F6VBZ6_CIOIN	Telo_bind domain-containing protein. (527 aa)
	H2XP61_CIOIN	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs. (236 aa)
	H2XYG9_CIOIN	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (148 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6R982_CIOIN	F6U2M6_CIOIN	ENSCINP00000009975	ENSCINP00000009502	WD_REPEATS_REGION domain-containing protein.	PUA domain-containing protein.	0.972
F6R982_CIOIN	F6VBZ6_CIOIN	ENSCINP00000009975	ENSCINP00000027127	WD_REPEATS_REGION domain-containing protein.	Telo_bind domain-containing protein.	0.549
F6R982_CIOIN	F6WN37_CIOIN	ENSCINP00000009975	ENSCINP00000018724	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.835
F6R982_CIOIN	LOC100181113	ENSCINP00000009975	ENSCINP00000011858	WD_REPEATS_REGION domain-containing protein.	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	0.956
F6R982_CIOIN	LOC100187276	ENSCINP00000009975	ENSCINP00000018420	WD_REPEATS_REGION domain-containing protein.	Telomerase reverse transcriptase; Telomerase is a ribonucleoprotein enzyme essential for the replication of chromosome termini in most eukaryotes. It elongates telomeres. It is a reverse transcriptase that adds simple sequence repeats to chromosome ends by copying a template sequence within the RNA component of the enzyme.	0.863
F6U2M6_CIOIN	F6R982_CIOIN	ENSCINP00000009502	ENSCINP00000009975	PUA domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.972
F6U2M6_CIOIN	F6VBZ6_CIOIN	ENSCINP00000009502	ENSCINP00000027127	PUA domain-containing protein.	Telo_bind domain-containing protein.	0.649
F6U2M6_CIOIN	F6VH72_CIOIN	ENSCINP00000009502	ENSCINP00000016398	PUA domain-containing protein.	CS domain-containing protein.	0.997
F6U2M6_CIOIN	F6WN37_CIOIN	ENSCINP00000009502	ENSCINP00000018724	PUA domain-containing protein.	Uncharacterized protein.	0.473
F6U2M6_CIOIN	H2XP61_CIOIN	ENSCINP00000009502	ENSCINP00000031444	PUA domain-containing protein.	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	0.994
F6U2M6_CIOIN	LOC100181113	ENSCINP00000009502	ENSCINP00000011858	PUA domain-containing protein.	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	0.999
F6U2M6_CIOIN	LOC100187276	ENSCINP00000009502	ENSCINP00000018420	PUA domain-containing protein.	Telomerase reverse transcriptase; Telomerase is a ribonucleoprotein enzyme essential for the replication of chromosome termini in most eukaryotes. It elongates telomeres. It is a reverse transcriptase that adds simple sequence repeats to chromosome ends by copying a template sequence within the RNA component of the enzyme.	0.895
F6VBZ6_CIOIN	F6R982_CIOIN	ENSCINP00000027127	ENSCINP00000009975	Telo_bind domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.549
F6VBZ6_CIOIN	F6U2M6_CIOIN	ENSCINP00000027127	ENSCINP00000009502	Telo_bind domain-containing protein.	PUA domain-containing protein.	0.649
F6VBZ6_CIOIN	F6WN37_CIOIN	ENSCINP00000027127	ENSCINP00000018724	Telo_bind domain-containing protein.	Uncharacterized protein.	0.522
F6VBZ6_CIOIN	F7BHB8_CIOIN	ENSCINP00000027127	ENSCINP00000019202	Telo_bind domain-containing protein.	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	0.445
F6VBZ6_CIOIN	H2XYG9_CIOIN	ENSCINP00000027127	ENSCINP00000034703	Telo_bind domain-containing protein.	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	0.445
F6VBZ6_CIOIN	LOC100181113	ENSCINP00000027127	ENSCINP00000011858	Telo_bind domain-containing protein.	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	0.738
F6VBZ6_CIOIN	LOC100187276	ENSCINP00000027127	ENSCINP00000018420	Telo_bind domain-containing protein.	Telomerase reverse transcriptase; Telomerase is a ribonucleoprotein enzyme essential for the replication of chromosome termini in most eukaryotes. It elongates telomeres. It is a reverse transcriptase that adds simple sequence repeats to chromosome ends by copying a template sequence within the RNA component of the enzyme.	0.931
F6VH72_CIOIN	F6U2M6_CIOIN	ENSCINP00000016398	ENSCINP00000009502	CS domain-containing protein.	PUA domain-containing protein.	0.997