(11 nodes) Sialic acid transport network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F6W7E5_CIOIN	MFS domain-containing protein. (219 aa)
	tlx	Transcription factor protein isoform X1. (476 aa)
	F7AE23_CIOIN	MFS domain-containing protein. (196 aa)
	F6W5S5_CIOIN	MFS domain-containing protein. (458 aa)
	F6XRJ9_CIOIN	Uncharacterized protein. (190 aa)
	F6ZDN7_CIOIN	MFS domain-containing protein. (487 aa)
	LOC100175186	Sialin-like isoform X2. (408 aa)
	H2XQD3_CIOIN	MFS domain-containing protein. (195 aa)
	H2XQG5_CIOIN	MFS domain-containing protein. (257 aa)
	H2XSF0_CIOIN	Uncharacterized protein. (157 aa)
	H2Y1C5_CIOIN	MFS domain-containing protein. (231 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6W5S5_CIOIN	tlx	ENSCINP00000016072	ENSCINP00000012758	MFS domain-containing protein.	Transcription factor protein isoform X1.	0.540
F6W7E5_CIOIN	H2XQD3_CIOIN	ENSCINP00000002822	ENSCINP00000031867	MFS domain-containing protein.	MFS domain-containing protein.	0.478
F6W7E5_CIOIN	H2XSF0_CIOIN	ENSCINP00000002822	ENSCINP00000032584	MFS domain-containing protein.	Uncharacterized protein.	0.402
F6W7E5_CIOIN	LOC100175186	ENSCINP00000002822	ENSCINP00000029842	MFS domain-containing protein.	Sialin-like isoform X2.	0.505
F6ZDN7_CIOIN	tlx	ENSCINP00000021274	ENSCINP00000012758	MFS domain-containing protein.	Transcription factor protein isoform X1.	0.540
F7AE23_CIOIN	H2XQD3_CIOIN	ENSCINP00000014429	ENSCINP00000031867	MFS domain-containing protein.	MFS domain-containing protein.	0.424
F7AE23_CIOIN	LOC100175186	ENSCINP00000014429	ENSCINP00000029842	MFS domain-containing protein.	Sialin-like isoform X2.	0.508
F7AE23_CIOIN	tlx	ENSCINP00000014429	ENSCINP00000012758	MFS domain-containing protein.	Transcription factor protein isoform X1.	0.540
H2XQD3_CIOIN	F6W7E5_CIOIN	ENSCINP00000031867	ENSCINP00000002822	MFS domain-containing protein.	MFS domain-containing protein.	0.478
H2XQD3_CIOIN	F7AE23_CIOIN	ENSCINP00000031867	ENSCINP00000014429	MFS domain-containing protein.	MFS domain-containing protein.	0.424
H2XSF0_CIOIN	F6W7E5_CIOIN	ENSCINP00000032584	ENSCINP00000002822	Uncharacterized protein.	MFS domain-containing protein.	0.402
LOC100175186	F6W7E5_CIOIN	ENSCINP00000029842	ENSCINP00000002822	Sialin-like isoform X2.	MFS domain-containing protein.	0.505
LOC100175186	F7AE23_CIOIN	ENSCINP00000029842	ENSCINP00000014429	Sialin-like isoform X2.	MFS domain-containing protein.	0.508
LOC100175186	tlx	ENSCINP00000029842	ENSCINP00000012758	Sialin-like isoform X2.	Transcription factor protein isoform X1.	0.540
tlx	F6W5S5_CIOIN	ENSCINP00000012758	ENSCINP00000016072	Transcription factor protein isoform X1.	MFS domain-containing protein.	0.540
tlx	F6ZDN7_CIOIN	ENSCINP00000012758	ENSCINP00000021274	Transcription factor protein isoform X1.	MFS domain-containing protein.	0.540
tlx	F7AE23_CIOIN	ENSCINP00000012758	ENSCINP00000014429	Transcription factor protein isoform X1.	MFS domain-containing protein.	0.540
tlx	LOC100175186	ENSCINP00000012758	ENSCINP00000029842	Transcription factor protein isoform X1.	Sialin-like isoform X2.	0.540