(32 nodes) Endosomal Sorting Complex Required For Transport (ESCRT), and BRO1 domain superfamily network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F6U568_CIOIN	UMA domain-containing protein. (472 aa)
	F6SCE7_CIOIN	Uncharacterized protein. (361 aa)
	LOC100176174	Uncharacterized protein. (221 aa)
	LOC100182764	Charged multivesicular body protein 5. (217 aa)
	F7AQ24_CIOIN	Uncharacterized protein. (323 aa)
	LOC100183161	Multivesicular body subunit 12B-like isoform X1. (248 aa)
	LOC100176704	Vacuolar-sorting protein SNF8; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family. (248 aa)
	zf(fyve)-11	Uncharacterized protein. (717 aa)
	LOC100180144	Vacuolar protein sorting-associated protein 4B-like; Belongs to the AAA ATPase family. (438 aa)
	F6W8M0_CIOIN	Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family. (565 aa)
	LOC100182510	Uncharacterized protein LOC100182510. (158 aa)
	LOC100184880	Fidgetin-like protein 1; Belongs to the AAA ATPase family. (597 aa)
	LOC100182534	Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process. (208 aa)
	F6PHZ4_CIOIN	Uncharacterized protein. (266 aa)
	LOC100175291	Uncharacterized protein LOC100175291. (180 aa)
	LOC100178975	Charged multivesicular body protein 2a-like. (222 aa)
	LOC100179674	Vacuolar protein sorting-associated protein 37B-like. (252 aa)
	F6XUK1_CIOIN	Uncharacterized protein. (211 aa)
	F7BDH1_CIOIN	BRO1 domain-containing protein. (902 aa)
	F7A912_CIOIN	Uncharacterized protein; Belongs to the peptidase C19 family. (1072 aa)
	LOC100178072	Uncharacterized protein. (915 aa)
	F6ZFT6_CIOIN	Uncharacterized protein. (454 aa)
	F6UBJ3_CIOIN	USP domain-containing protein; Belongs to the peptidase C19 family. (345 aa)
	LOC100180662	Charged multivesicular body protein 6-B-like. (204 aa)
	LOC100181387	Magnesium-dependent phosphatase 1-like. (168 aa)
	LOC100185572	Charged multivesicular body protein 4b-like isoform X1. (217 aa)
	Ci-ZF(FYVE)-10	Zinc finger protein. (375 aa)
	LOC104265386	Uncharacterized protein. (402 aa)
	LOC100177673	Vacuolar protein-sorting-associated protein 25. (176 aa)
	H2XPM9_CIOIN	Uncharacterized protein. (209 aa)
	LOC104266244	Vacuolar protein sorting-associated protein VTA1 homolog. (291 aa)
	H2XUG4_CIOIN	Uncharacterized protein. (95 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Ci-ZF(FYVE)-10	F6PHZ4_CIOIN	ENSCINP00000031381	ENSCINP00000020279	Zinc finger protein.	Uncharacterized protein.	0.943
Ci-ZF(FYVE)-10	F6UBJ3_CIOIN	ENSCINP00000031381	ENSCINP00000024974	Zinc finger protein.	USP domain-containing protein; Belongs to the peptidase C19 family.	0.505
Ci-ZF(FYVE)-10	F6W8M0_CIOIN	ENSCINP00000031381	ENSCINP00000014563	Zinc finger protein.	Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family.	0.567
Ci-ZF(FYVE)-10	F7A912_CIOIN	ENSCINP00000031381	ENSCINP00000023650	Zinc finger protein.	Uncharacterized protein; Belongs to the peptidase C19 family.	0.505
Ci-ZF(FYVE)-10	F7AQ24_CIOIN	ENSCINP00000031381	ENSCINP00000010164	Zinc finger protein.	Uncharacterized protein.	0.657
Ci-ZF(FYVE)-10	H2XPM9_CIOIN	ENSCINP00000031381	ENSCINP00000031613	Zinc finger protein.	Uncharacterized protein.	0.477
Ci-ZF(FYVE)-10	LOC100175291	ENSCINP00000031381	ENSCINP00000021680	Zinc finger protein.	Uncharacterized protein LOC100175291.	0.484
Ci-ZF(FYVE)-10	LOC100176174	ENSCINP00000031381	ENSCINP00000009335	Zinc finger protein.	Uncharacterized protein.	0.484
Ci-ZF(FYVE)-10	LOC100176704	ENSCINP00000031381	ENSCINP00000012524	Zinc finger protein.	Vacuolar-sorting protein SNF8; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family.	0.708
Ci-ZF(FYVE)-10	LOC100177673	ENSCINP00000031381	ENSCINP00000031552	Zinc finger protein.	Vacuolar protein-sorting-associated protein 25.	0.721
Ci-ZF(FYVE)-10	LOC100178975	ENSCINP00000031381	ENSCINP00000021747	Zinc finger protein.	Charged multivesicular body protein 2a-like.	0.762
Ci-ZF(FYVE)-10	LOC100179674	ENSCINP00000031381	ENSCINP00000022467	Zinc finger protein.	Vacuolar protein sorting-associated protein 37B-like.	0.594
Ci-ZF(FYVE)-10	LOC100180144	ENSCINP00000031381	ENSCINP00000013451	Zinc finger protein.	Vacuolar protein sorting-associated protein 4B-like; Belongs to the AAA ATPase family.	0.484
Ci-ZF(FYVE)-10	LOC100180662	ENSCINP00000031381	ENSCINP00000026802	Zinc finger protein.	Charged multivesicular body protein 6-B-like.	0.477
Ci-ZF(FYVE)-10	LOC100182534	ENSCINP00000031381	ENSCINP00000020236	Zinc finger protein.	Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.	0.732
Ci-ZF(FYVE)-10	LOC100183161	ENSCINP00000031381	ENSCINP00000011486	Zinc finger protein.	Multivesicular body subunit 12B-like isoform X1.	0.546
Ci-ZF(FYVE)-10	LOC104265386	ENSCINP00000031381	ENSCINP00000031475	Zinc finger protein.	Uncharacterized protein.	0.917
Ci-ZF(FYVE)-10	LOC104266244	ENSCINP00000031381	ENSCINP00000031885	Zinc finger protein.	Vacuolar protein sorting-associated protein VTA1 homolog.	0.468
F6PHZ4_CIOIN	Ci-ZF(FYVE)-10	ENSCINP00000020279	ENSCINP00000031381	Uncharacterized protein.	Zinc finger protein.	0.943
F6PHZ4_CIOIN	F6SCE7_CIOIN	ENSCINP00000020279	ENSCINP00000005933	Uncharacterized protein.	Uncharacterized protein.	0.508