(6 nodes) Mixed, incl. Beta-propeller repeat TECPR, and Protein localization to phagophore assembly site network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F6SX89_CIOIN	Uncharacterized protein. (382 aa)
	F6SQH1_CIOIN	Uncharacterized protein. (172 aa)
	LOC100180836	WD repeat domain phosphoinositide-interacting protein 3. (336 aa)
	F6Y3Y3_CIOIN	Uncharacterized protein. (154 aa)
	F6ZEK3_CIOIN	Uncharacterized protein. (194 aa)
	LOC100181401	WD repeat domain phosphoinositide-interacting protein 4. (344 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6SQH1_CIOIN	F6SX89_CIOIN	ENSCINP00000006507	ENSCINP00000002629	Uncharacterized protein.	Uncharacterized protein.	0.686
F6SQH1_CIOIN	F6ZEK3_CIOIN	ENSCINP00000006507	ENSCINP00000029697	Uncharacterized protein.	Uncharacterized protein.	0.686
F6SQH1_CIOIN	LOC100180836	ENSCINP00000006507	ENSCINP00000016797	Uncharacterized protein.	WD repeat domain phosphoinositide-interacting protein 3.	0.548
F6SQH1_CIOIN	LOC100181401	ENSCINP00000006507	ENSCINP00000031713	Uncharacterized protein.	WD repeat domain phosphoinositide-interacting protein 4.	0.548
F6SX89_CIOIN	F6SQH1_CIOIN	ENSCINP00000002629	ENSCINP00000006507	Uncharacterized protein.	Uncharacterized protein.	0.686
F6SX89_CIOIN	F6Y3Y3_CIOIN	ENSCINP00000002629	ENSCINP00000023430	Uncharacterized protein.	Uncharacterized protein.	0.686
F6Y3Y3_CIOIN	F6SX89_CIOIN	ENSCINP00000023430	ENSCINP00000002629	Uncharacterized protein.	Uncharacterized protein.	0.686
F6Y3Y3_CIOIN	F6ZEK3_CIOIN	ENSCINP00000023430	ENSCINP00000029697	Uncharacterized protein.	Uncharacterized protein.	0.686
F6Y3Y3_CIOIN	LOC100180836	ENSCINP00000023430	ENSCINP00000016797	Uncharacterized protein.	WD repeat domain phosphoinositide-interacting protein 3.	0.548
F6Y3Y3_CIOIN	LOC100181401	ENSCINP00000023430	ENSCINP00000031713	Uncharacterized protein.	WD repeat domain phosphoinositide-interacting protein 4.	0.548
F6ZEK3_CIOIN	F6SQH1_CIOIN	ENSCINP00000029697	ENSCINP00000006507	Uncharacterized protein.	Uncharacterized protein.	0.686
F6ZEK3_CIOIN	F6Y3Y3_CIOIN	ENSCINP00000029697	ENSCINP00000023430	Uncharacterized protein.	Uncharacterized protein.	0.686
LOC100180836	F6SQH1_CIOIN	ENSCINP00000016797	ENSCINP00000006507	WD repeat domain phosphoinositide-interacting protein 3.	Uncharacterized protein.	0.548
LOC100180836	F6Y3Y3_CIOIN	ENSCINP00000016797	ENSCINP00000023430	WD repeat domain phosphoinositide-interacting protein 3.	Uncharacterized protein.	0.548
LOC100181401	F6SQH1_CIOIN	ENSCINP00000031713	ENSCINP00000006507	WD repeat domain phosphoinositide-interacting protein 4.	Uncharacterized protein.	0.548
LOC100181401	F6Y3Y3_CIOIN	ENSCINP00000031713	ENSCINP00000023430	WD repeat domain phosphoinositide-interacting protein 4.	Uncharacterized protein.	0.548