(58 nodes) LDL receptor-like superfamily, and LDLR class B repeat network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F6ZI14_CIOIN	Uncharacterized protein. (433 aa)
	F7BL24_CIOIN	G_PROTEIN_RECEP_F1_2 domain-containing protein. (581 aa)
	LOC100175740	CD166 antigen. (397 aa)
	F6YEL1_CIOIN	Uncharacterized protein. (763 aa)
	F6U8Y1_CIOIN	G_PROTEIN_RECEP_F1_2 domain-containing protein. (479 aa)
	LOC100179477	G_PROTEIN_RECEP_F1_2 domain-containing protein. (510 aa)
	F6VI45_CIOIN	Uncharacterized protein. (211 aa)
	F6U688_CIOIN	Uncharacterized protein. (744 aa)
	F6S6H2_CIOIN	Uncharacterized protein. (161 aa)
	F6YWW9_CIOIN	P/Homo B domain-containing protein; Belongs to the peptidase S8 family. (688 aa)
	F7ARH4_CIOIN	Uncharacterized protein. (1563 aa)
	F6RZH2_CIOIN	Uncharacterized protein. (617 aa)
	F6X197_CIOIN	Uncharacterized protein. (502 aa)
	LOC100185399	Uncharacterized protein. (352 aa)
	F6XKD5_CIOIN	G_PROTEIN_RECEP_F1_2 domain-containing protein. (444 aa)
	LOC100125887	Uncharacterized protein. (598 aa)
	F6XU75_CIOIN	Uncharacterized protein. (218 aa)
	F6XU68_CIOIN	Uncharacterized protein. (141 aa)
	F7ABQ9_CIOIN	G_PROTEIN_RECEP_F1_2 domain-containing protein. (504 aa)
	F6V7E5_CIOIN	Uncharacterized protein. (208 aa)
	F6ZH24_CIOIN	Uncharacterized protein. (1903 aa)
	F6YVM5_CIOIN	Uncharacterized protein. (131 aa)
	F6PUY5_CIOIN	G_PROTEIN_RECEP_F1_2 domain-containing protein. (514 aa)
	F7AII3_CIOIN	Uncharacterized protein. (385 aa)
	LOC101243466	Uncharacterized protein. (605 aa)
	H2XKG9_CIOIN	G_PROTEIN_RECEP_F1_2 domain-containing protein. (510 aa)
	H2XKV6_CIOIN	Uncharacterized protein. (222 aa)
	H2XKW4_CIOIN	G_PROTEIN_RECEP_F1_2 domain-containing protein. (502 aa)
	H2XLM3_CIOIN	Uncharacterized protein. (1201 aa)
	H2XLT9_CIOIN	Uncharacterized protein. (233 aa)
	H2XP28_CIOIN	G_PROTEIN_RECEP_F1_2 domain-containing protein. (483 aa)
	H2XP69_CIOIN	Uncharacterized protein. (177 aa)
	H2XRP4_CIOIN	Uncharacterized protein. (126 aa)
	H2XRY4_CIOIN	Uncharacterized protein. (222 aa)
	H2XT32_CIOIN	Uncharacterized protein. (127 aa)
	H2XT48_CIOIN	Uncharacterized protein. (85 aa)
	H2XU84_CIOIN	Uncharacterized protein. (219 aa)
	H2XUN8_CIOIN	Uncharacterized protein. (203 aa)
	LOC100177853	Dickkopf-related protein 3. (394 aa)
	H2XWC6_CIOIN	EGF-like domain-containing protein. (217 aa)
	H2XWS5_CIOIN	Uncharacterized protein. (200 aa)
	H2XXE8_CIOIN	Uncharacterized protein. (464 aa)
	H2XXS3_CIOIN	Uncharacterized protein. (482 aa)
	H2XY79_CIOIN	G_PROTEIN_RECEP_F1_2 domain-containing protein. (468 aa)
	H2XYD1_CIOIN	EGF-like domain-containing protein. (325 aa)
	H2XYP7_CIOIN	G_PROTEIN_RECEP_F1_2 domain-containing protein. (430 aa)
	H2XYQ7_CIOIN	Uncharacterized protein. (155 aa)
	H2XYT0_CIOIN	Uncharacterized protein. (253 aa)
	H2XYZ5_CIOIN	Uncharacterized protein. (147 aa)
	H2XZE9_CIOIN	Uncharacterized protein. (251 aa)
	H2XZG1_CIOIN	Uncharacterized protein. (206 aa)
	H2Y0C2_CIOIN	Uncharacterized protein. (138 aa)
	H2Y0P5_CIOIN	G_PROTEIN_RECEP_F1_2 domain-containing protein. (508 aa)
	H2Y0V6_CIOIN	Uncharacterized protein. (204 aa)
	H2Y106_CIOIN	Uncharacterized protein. (231 aa)
	H2Y298_CIOIN	Uncharacterized protein. (228 aa)
	H2Y3G8_CIOIN	Kazal-like domain-containing protein. (275 aa)
	H2Y3V1_CIOIN	Uncharacterized protein. (296 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6RZH2_CIOIN	H2XYT0_CIOIN	ENSCINP00000015201	ENSCINP00000034814	Uncharacterized protein.	Uncharacterized protein.	0.899
F6S6H2_CIOIN	F6U688_CIOIN	ENSCINP00000011305	ENSCINP00000011287	Uncharacterized protein.	Uncharacterized protein.	0.900
F6S6H2_CIOIN	H2XKV6_CIOIN	ENSCINP00000011305	ENSCINP00000030288	Uncharacterized protein.	Uncharacterized protein.	0.918
F6S6H2_CIOIN	H2XUN8_CIOIN	ENSCINP00000011305	ENSCINP00000033372	Uncharacterized protein.	Uncharacterized protein.	0.899
F6S6H2_CIOIN	H2XZE9_CIOIN	ENSCINP00000011305	ENSCINP00000035033	Uncharacterized protein.	Uncharacterized protein.	0.899
F6S6H2_CIOIN	H2Y106_CIOIN	ENSCINP00000011305	ENSCINP00000035590	Uncharacterized protein.	Uncharacterized protein.	0.900
F6U688_CIOIN	F6S6H2_CIOIN	ENSCINP00000011287	ENSCINP00000011305	Uncharacterized protein.	Uncharacterized protein.	0.900
F6U688_CIOIN	H2XRY4_CIOIN	ENSCINP00000011287	ENSCINP00000032418	Uncharacterized protein.	Uncharacterized protein.	0.885
F6U688_CIOIN	H2XUN8_CIOIN	ENSCINP00000011287	ENSCINP00000033372	Uncharacterized protein.	Uncharacterized protein.	0.900
F6U688_CIOIN	H2XYD1_CIOIN	ENSCINP00000011287	ENSCINP00000034665	Uncharacterized protein.	EGF-like domain-containing protein.	0.545
F6U688_CIOIN	H2XZE9_CIOIN	ENSCINP00000011287	ENSCINP00000035033	Uncharacterized protein.	Uncharacterized protein.	0.897
F6U688_CIOIN	LOC101243466	ENSCINP00000011287	ENSCINP00000029716	Uncharacterized protein.	Uncharacterized protein.	0.895
F6V7E5_CIOIN	F6XKD5_CIOIN	ENSCINP00000024022	ENSCINP00000021667	Uncharacterized protein.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.501
F6V7E5_CIOIN	H2XP28_CIOIN	ENSCINP00000024022	ENSCINP00000031411	Uncharacterized protein.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.496
F6V7E5_CIOIN	H2XWC6_CIOIN	ENSCINP00000024022	ENSCINP00000033960	Uncharacterized protein.	EGF-like domain-containing protein.	0.531
F6V7E5_CIOIN	H2XWS5_CIOIN	ENSCINP00000024022	ENSCINP00000034109	Uncharacterized protein.	Uncharacterized protein.	0.517
F6V7E5_CIOIN	H2XY79_CIOIN	ENSCINP00000024022	ENSCINP00000034613	Uncharacterized protein.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.433
F6V7E5_CIOIN	H2XYZ5_CIOIN	ENSCINP00000024022	ENSCINP00000034879	Uncharacterized protein.	Uncharacterized protein.	0.472
F6V7E5_CIOIN	H2Y3V1_CIOIN	ENSCINP00000024022	ENSCINP00000036587	Uncharacterized protein.	Uncharacterized protein.	0.596
F6V7E5_CIOIN	LOC101243466	ENSCINP00000024022	ENSCINP00000029716	Uncharacterized protein.	Uncharacterized protein.	0.448