(25 nodes) Mixed, incl. Peptidase C1A, and Aspartyl protease network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F6Z3D0_CIOIN	Uncharacterized protein; Belongs to the peptidase C1 family. (338 aa)
	F6TBE2_CIOIN	Uncharacterized protein. (444 aa)
	LOC101242267	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (164 aa)
	LOC108950261	Beta-secretase 1-like; Belongs to the peptidase A1 family. (466 aa)
	LOC100186909	Peptidase A1 domain-containing protein; Belongs to the peptidase A1 family. (389 aa)
	F6PXX9_CIOIN	Uncharacterized protein. (467 aa)
	F7A7N9_CIOIN	Uncharacterized protein. (220 aa)
	LOC100178400	Uncharacterized protein. (212 aa)
	LOC104266675	Pept_C1 domain-containing protein; Belongs to the peptidase C1 family. (226 aa)
	LOC100187119	Uncharacterized protein; Belongs to the peptidase C1 family. (335 aa)
	LOC100179909	Uncharacterized protein; Belongs to the peptidase C1 family. (341 aa)
	LOC100176092	Cathepsin L1-like isoform X3; Belongs to the peptidase C1 family. (327 aa)
	LOC100176092-2	Cathepsin L1-like isoform X1; Belongs to the peptidase C1 family. (330 aa)
	F6WXG6_CIOIN	Uncharacterized protein; Belongs to the peptidase C1 family. (333 aa)
	F6PSZ6_CIOIN	Uncharacterized protein. (205 aa)
	F6PSX9_CIOIN	Uncharacterized protein. (240 aa)
	LOC100176157	Tricarboxylate transport protein, mitochondrial-like; Belongs to the mitochondrial carrier (TC 2.A.29) family. (344 aa)
	LOC100184687	UPF0428 protein CXorf56 homolog. (216 aa)
	H2XP77_CIOIN	Pept_C1 domain-containing protein; Belongs to the peptidase C1 family. (206 aa)
	LOC100183589	Uncharacterized protein; Belongs to the peptidase S10 family. (458 aa)
	H2XQN0_CIOIN	Uncharacterized protein. (206 aa)
	H2XS68_CIOIN	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (298 aa)
	H2XT42_CIOIN	Uncharacterized protein. (88 aa)
	H2XVV3_CIOIN	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (297 aa)
	H2Y0H5_CIOIN	Peptidase A1 domain-containing protein; Belongs to the peptidase A1 family. (392 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6PSX9_CIOIN	F6WXG6_CIOIN	ENSCINP00000023895	ENSCINP00000019058	Uncharacterized protein.	Uncharacterized protein; Belongs to the peptidase C1 family.	0.413
F6PSX9_CIOIN	F6Z3D0_CIOIN	ENSCINP00000023895	ENSCINP00000003040	Uncharacterized protein.	Uncharacterized protein; Belongs to the peptidase C1 family.	0.447
F6PSX9_CIOIN	H2XP77_CIOIN	ENSCINP00000023895	ENSCINP00000031460	Uncharacterized protein.	Pept_C1 domain-containing protein; Belongs to the peptidase C1 family.	0.462
F6PSX9_CIOIN	H2XS68_CIOIN	ENSCINP00000023895	ENSCINP00000032502	Uncharacterized protein.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.424
F6PSX9_CIOIN	H2XVV3_CIOIN	ENSCINP00000023895	ENSCINP00000033787	Uncharacterized protein.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.424
F6PSX9_CIOIN	LOC100176157	ENSCINP00000023895	ENSCINP00000025857	Uncharacterized protein.	Tricarboxylate transport protein, mitochondrial-like; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.476
F6PSX9_CIOIN	LOC100178400	ENSCINP00000023895	ENSCINP00000015117	Uncharacterized protein.	Uncharacterized protein.	0.476
F6PSX9_CIOIN	LOC100184687	ENSCINP00000023895	ENSCINP00000026580	Uncharacterized protein.	UPF0428 protein CXorf56 homolog.	0.476
F6PSX9_CIOIN	LOC104266675	ENSCINP00000023895	ENSCINP00000015202	Uncharacterized protein.	Pept_C1 domain-containing protein; Belongs to the peptidase C1 family.	0.419
F6PSZ6_CIOIN	F6WXG6_CIOIN	ENSCINP00000023893	ENSCINP00000019058	Uncharacterized protein.	Uncharacterized protein; Belongs to the peptidase C1 family.	0.413
F6PSZ6_CIOIN	F6Z3D0_CIOIN	ENSCINP00000023893	ENSCINP00000003040	Uncharacterized protein.	Uncharacterized protein; Belongs to the peptidase C1 family.	0.447
F6PSZ6_CIOIN	H2XP77_CIOIN	ENSCINP00000023893	ENSCINP00000031460	Uncharacterized protein.	Pept_C1 domain-containing protein; Belongs to the peptidase C1 family.	0.462
F6PSZ6_CIOIN	H2XS68_CIOIN	ENSCINP00000023893	ENSCINP00000032502	Uncharacterized protein.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.424
F6PSZ6_CIOIN	H2XVV3_CIOIN	ENSCINP00000023893	ENSCINP00000033787	Uncharacterized protein.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.424
F6PSZ6_CIOIN	LOC100176157	ENSCINP00000023893	ENSCINP00000025857	Uncharacterized protein.	Tricarboxylate transport protein, mitochondrial-like; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.476
F6PSZ6_CIOIN	LOC100178400	ENSCINP00000023893	ENSCINP00000015117	Uncharacterized protein.	Uncharacterized protein.	0.476
F6PSZ6_CIOIN	LOC100184687	ENSCINP00000023893	ENSCINP00000026580	Uncharacterized protein.	UPF0428 protein CXorf56 homolog.	0.476
F6PSZ6_CIOIN	LOC104266675	ENSCINP00000023893	ENSCINP00000015202	Uncharacterized protein.	Pept_C1 domain-containing protein; Belongs to the peptidase C1 family.	0.419
F6PXX9_CIOIN	F6Z3D0_CIOIN	ENSCINP00000013045	ENSCINP00000003040	Uncharacterized protein.	Uncharacterized protein; Belongs to the peptidase C1 family.	0.446
F6PXX9_CIOIN	H2XP77_CIOIN	ENSCINP00000013045	ENSCINP00000031460	Uncharacterized protein.	Pept_C1 domain-containing protein; Belongs to the peptidase C1 family.	0.543