(5 nodes) BBSome network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F6YHN3_CIOIN	Uncharacterized protein. (728 aa)
	F6ZZ65_CIOIN	Uncharacterized protein. (582 aa)
	F6Y677_CIOIN	Uncharacterized protein. (502 aa)
	LOC100184123	Bardet-Biedl syndrome 2 protein homolog. (708 aa)
	LOC100181654	PHTB1_N domain-containing protein. (441 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6Y677_CIOIN	F6YHN3_CIOIN	ENSCINP00000019927	ENSCINP00000008442	Uncharacterized protein.	Uncharacterized protein.	0.986
F6Y677_CIOIN	F6ZZ65_CIOIN	ENSCINP00000019927	ENSCINP00000012520	Uncharacterized protein.	Uncharacterized protein.	0.990
F6Y677_CIOIN	LOC100181654	ENSCINP00000019927	ENSCINP00000032115	Uncharacterized protein.	PHTB1_N domain-containing protein.	0.990
F6Y677_CIOIN	LOC100184123	ENSCINP00000019927	ENSCINP00000025380	Uncharacterized protein.	Bardet-Biedl syndrome 2 protein homolog.	0.990
F6YHN3_CIOIN	F6Y677_CIOIN	ENSCINP00000008442	ENSCINP00000019927	Uncharacterized protein.	Uncharacterized protein.	0.986
F6YHN3_CIOIN	F6ZZ65_CIOIN	ENSCINP00000008442	ENSCINP00000012520	Uncharacterized protein.	Uncharacterized protein.	0.987
F6YHN3_CIOIN	LOC100181654	ENSCINP00000008442	ENSCINP00000032115	Uncharacterized protein.	PHTB1_N domain-containing protein.	0.986
F6YHN3_CIOIN	LOC100184123	ENSCINP00000008442	ENSCINP00000025380	Uncharacterized protein.	Bardet-Biedl syndrome 2 protein homolog.	0.990
F6ZZ65_CIOIN	F6Y677_CIOIN	ENSCINP00000012520	ENSCINP00000019927	Uncharacterized protein.	Uncharacterized protein.	0.990
F6ZZ65_CIOIN	F6YHN3_CIOIN	ENSCINP00000012520	ENSCINP00000008442	Uncharacterized protein.	Uncharacterized protein.	0.987
F6ZZ65_CIOIN	LOC100181654	ENSCINP00000012520	ENSCINP00000032115	Uncharacterized protein.	PHTB1_N domain-containing protein.	0.992
F6ZZ65_CIOIN	LOC100184123	ENSCINP00000012520	ENSCINP00000025380	Uncharacterized protein.	Bardet-Biedl syndrome 2 protein homolog.	0.988
LOC100181654	F6Y677_CIOIN	ENSCINP00000032115	ENSCINP00000019927	PHTB1_N domain-containing protein.	Uncharacterized protein.	0.990
LOC100181654	F6YHN3_CIOIN	ENSCINP00000032115	ENSCINP00000008442	PHTB1_N domain-containing protein.	Uncharacterized protein.	0.986
LOC100181654	F6ZZ65_CIOIN	ENSCINP00000032115	ENSCINP00000012520	PHTB1_N domain-containing protein.	Uncharacterized protein.	0.992
LOC100181654	LOC100184123	ENSCINP00000032115	ENSCINP00000025380	PHTB1_N domain-containing protein.	Bardet-Biedl syndrome 2 protein homolog.	0.991
LOC100184123	F6Y677_CIOIN	ENSCINP00000025380	ENSCINP00000019927	Bardet-Biedl syndrome 2 protein homolog.	Uncharacterized protein.	0.990
LOC100184123	F6YHN3_CIOIN	ENSCINP00000025380	ENSCINP00000008442	Bardet-Biedl syndrome 2 protein homolog.	Uncharacterized protein.	0.990
LOC100184123	F6ZZ65_CIOIN	ENSCINP00000025380	ENSCINP00000012520	Bardet-Biedl syndrome 2 protein homolog.	Uncharacterized protein.	0.988
LOC100184123	LOC100181654	ENSCINP00000025380	ENSCINP00000032115	Bardet-Biedl syndrome 2 protein homolog.	PHTB1_N domain-containing protein.	0.991