(5 nodes) Protein dopey, and Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC100176476	PQ-loop repeat-containing protein 1-like isoform X1. (246 aa)
	F7BCR6_CIOIN	Uncharacterized protein. (356 aa)
	F7BCQ8_CIOIN	Dopey_N domain-containing protein. (229 aa)
	H2XZZ5_CIOIN	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily. (1074 aa)
	H2Y1R5_CIOIN	Uncharacterized protein. (580 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F7BCQ8_CIOIN	F7BCR6_CIOIN	ENSCINP00000016487	ENSCINP00000016486	Dopey_N domain-containing protein.	Uncharacterized protein.	0.900
F7BCQ8_CIOIN	H2XZZ5_CIOIN	ENSCINP00000016487	ENSCINP00000035229	Dopey_N domain-containing protein.	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	0.550
F7BCQ8_CIOIN	H2Y1R5_CIOIN	ENSCINP00000016487	ENSCINP00000035849	Dopey_N domain-containing protein.	Uncharacterized protein.	0.946
F7BCR6_CIOIN	F7BCQ8_CIOIN	ENSCINP00000016486	ENSCINP00000016487	Uncharacterized protein.	Dopey_N domain-containing protein.	0.900
F7BCR6_CIOIN	H2XZZ5_CIOIN	ENSCINP00000016486	ENSCINP00000035229	Uncharacterized protein.	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	0.412
F7BCR6_CIOIN	H2Y1R5_CIOIN	ENSCINP00000016486	ENSCINP00000035849	Uncharacterized protein.	Uncharacterized protein.	0.933
H2XZZ5_CIOIN	F7BCQ8_CIOIN	ENSCINP00000035229	ENSCINP00000016487	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	Dopey_N domain-containing protein.	0.550
H2XZZ5_CIOIN	F7BCR6_CIOIN	ENSCINP00000035229	ENSCINP00000016486	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	Uncharacterized protein.	0.412
H2XZZ5_CIOIN	H2Y1R5_CIOIN	ENSCINP00000035229	ENSCINP00000035849	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	Uncharacterized protein.	0.412
H2XZZ5_CIOIN	LOC100176476	ENSCINP00000035229	ENSCINP00000002198	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	PQ-loop repeat-containing protein 1-like isoform X1.	0.650
H2Y1R5_CIOIN	F7BCQ8_CIOIN	ENSCINP00000035849	ENSCINP00000016487	Uncharacterized protein.	Dopey_N domain-containing protein.	0.946
H2Y1R5_CIOIN	F7BCR6_CIOIN	ENSCINP00000035849	ENSCINP00000016486	Uncharacterized protein.	Uncharacterized protein.	0.933
H2Y1R5_CIOIN	H2XZZ5_CIOIN	ENSCINP00000035849	ENSCINP00000035229	Uncharacterized protein.	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	0.412
LOC100176476	H2XZZ5_CIOIN	ENSCINP00000002198	ENSCINP00000035229	PQ-loop repeat-containing protein 1-like isoform X1.	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	0.650