(35 nodes) RNA recognition motif network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	tardbp	Ci-Tardbp protein. (440 aa)
	F6SGH3_CIOIN	RRM domain-containing protein. (167 aa)
	F6WDS6_CIOIN	RRM domain-containing protein. (258 aa)
	F6UNM5_CIOIN	Uncharacterized protein. (357 aa)
	F7AEP7_CIOIN	RRM domain-containing protein. (158 aa)
	F6X5R6_CIOIN	Uncharacterized protein. (365 aa)
	F6WTH1_CIOIN	RRM domain-containing protein. (180 aa)
	F6WTB4_CIOIN	Uncharacterized protein. (199 aa)
	F6X134_CIOIN	Uncharacterized protein. (427 aa)
	F6R3U4_CIOIN	B30.2/SPRY domain-containing protein. (644 aa)
	LOC100175452	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (482 aa)
	F6Z145_CIOIN	Uncharacterized protein. (324 aa)
	Ci-ZF(C3H)-16	Zinc finger protein. (218 aa)
	F7AM07_CIOIN	RRM domain-containing protein. (166 aa)
	LOC100185978	Serine/arginine-rich splicing factor 5 isoform X1. (292 aa)
	F6XBC5_CIOIN	Protein kinase domain-containing protein. (656 aa)
	F6Y7T8_CIOIN	Uncharacterized protein. (283 aa)
	LOC100176319	Serine/arginine-rich splicing factor 1B isoform X2. (235 aa)
	yb1/2/3	CSP domain-containing protein. (320 aa)
	F6X986_CIOIN	RRM domain-containing protein. (149 aa)
	LOC100181118	Polyadenylate-binding protein 2-like. (225 aa)
	F6ZR14_CIOIN	Uncharacterized protein. (118 aa)
	F6ZH30_CIOIN	RRM domain-containing protein. (404 aa)
	F6YB82_CIOIN	Uncharacterized protein. (251 aa)
	F6QZW1_CIOIN	Uncharacterized protein. (308 aa)
	H2XLF9_CIOIN	hnRNP_Q_AcD domain-containing protein. (184 aa)
	Zf(c3h)-13	Uncharacterized protein. (477 aa)
	H2XPK9_CIOIN	Uncharacterized protein. (243 aa)
	H2XQH7_CIOIN	RRM domain-containing protein. (283 aa)
	H2XVD0_CIOIN	Uncharacterized protein. (535 aa)
	H2XX28_CIOIN	RRM domain-containing protein. (201 aa)
	LOC100184713	Serine/arginine-rich splicing factor 12 isoform X1. (227 aa)
	H2XY34_CIOIN	Uncharacterized protein. (342 aa)
	H2Y1J7_CIOIN	RRM domain-containing protein. (173 aa)
	zf(cchc)-24	Serine/arginine-rich splicing factor 7. (230 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Ci-ZF(C3H)-16	F6SGH3_CIOIN	ENSCINP00000008425	ENSCINP00000000458	Zinc finger protein.	RRM domain-containing protein.	0.740
Ci-ZF(C3H)-16	F6X5R6_CIOIN	ENSCINP00000008425	ENSCINP00000003632	Zinc finger protein.	Uncharacterized protein.	0.531
Ci-ZF(C3H)-16	F6X986_CIOIN	ENSCINP00000008425	ENSCINP00000022203	Zinc finger protein.	RRM domain-containing protein.	0.821
Ci-ZF(C3H)-16	F6XBC5_CIOIN	ENSCINP00000008425	ENSCINP00000013872	Zinc finger protein.	Protein kinase domain-containing protein.	0.483
Ci-ZF(C3H)-16	F6Y7T8_CIOIN	ENSCINP00000008425	ENSCINP00000014783	Zinc finger protein.	Uncharacterized protein.	0.636
Ci-ZF(C3H)-16	F6YB82_CIOIN	ENSCINP00000008425	ENSCINP00000026132	Zinc finger protein.	Uncharacterized protein.	0.575
Ci-ZF(C3H)-16	F6ZH30_CIOIN	ENSCINP00000008425	ENSCINP00000024217	Zinc finger protein.	RRM domain-containing protein.	0.685
Ci-ZF(C3H)-16	F6ZR14_CIOIN	ENSCINP00000008425	ENSCINP00000023666	Zinc finger protein.	Uncharacterized protein.	0.811
Ci-ZF(C3H)-16	F7AEP7_CIOIN	ENSCINP00000008425	ENSCINP00000002422	Zinc finger protein.	RRM domain-containing protein.	0.465
Ci-ZF(C3H)-16	F7AM07_CIOIN	ENSCINP00000008425	ENSCINP00000008678	Zinc finger protein.	RRM domain-containing protein.	0.862
Ci-ZF(C3H)-16	H2XPK9_CIOIN	ENSCINP00000008425	ENSCINP00000031593	Zinc finger protein.	Uncharacterized protein.	0.636
Ci-ZF(C3H)-16	H2XY34_CIOIN	ENSCINP00000008425	ENSCINP00000034568	Zinc finger protein.	Uncharacterized protein.	0.636
Ci-ZF(C3H)-16	LOC100175452	ENSCINP00000008425	ENSCINP00000007109	Zinc finger protein.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.999
Ci-ZF(C3H)-16	LOC100176319	ENSCINP00000008425	ENSCINP00000015147	Zinc finger protein.	Serine/arginine-rich splicing factor 1B isoform X2.	0.740
Ci-ZF(C3H)-16	LOC100181118	ENSCINP00000008425	ENSCINP00000023253	Zinc finger protein.	Polyadenylate-binding protein 2-like.	0.683
Ci-ZF(C3H)-16	LOC100185978	ENSCINP00000008425	ENSCINP00000010229	Zinc finger protein.	Serine/arginine-rich splicing factor 5 isoform X1.	0.636
Ci-ZF(C3H)-16	Zf(c3h)-13	ENSCINP00000008425	ENSCINP00000031066	Zinc finger protein.	Uncharacterized protein.	0.640
Ci-ZF(C3H)-16	zf(cchc)-24	ENSCINP00000008425	ENSCINP00000035904	Zinc finger protein.	Serine/arginine-rich splicing factor 7.	0.575
F6QZW1_CIOIN	F6R3U4_CIOIN	ENSCINP00000028810	ENSCINP00000006044	Uncharacterized protein.	B30.2/SPRY domain-containing protein.	0.428
F6QZW1_CIOIN	F6SGH3_CIOIN	ENSCINP00000028810	ENSCINP00000000458	Uncharacterized protein.	RRM domain-containing protein.	0.480