(5 nodes) Mixed, incl. Paraneoplastic encephalomyelitis antigen, and Photoperiodism network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F6QMU4_CIOIN	Uncharacterized protein. (390 aa)
	LOC100185985	RNA binding protein fox-1 homolog 3 isoform X8. (448 aa)
	H2XJJ8_CIOIN	RRM domain-containing protein. (229 aa)
	H2XR28_CIOIN	Uncharacterized protein. (263 aa)
	H2Y1H5_CIOIN	RRM domain-containing protein. (170 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6QMU4_CIOIN	H2XJJ8_CIOIN	ENSCINP00000009765	ENSCINP00000029830	Uncharacterized protein.	RRM domain-containing protein.	0.571
F6QMU4_CIOIN	H2XR28_CIOIN	ENSCINP00000009765	ENSCINP00000032112	Uncharacterized protein.	Uncharacterized protein.	0.488
F6QMU4_CIOIN	H2Y1H5_CIOIN	ENSCINP00000009765	ENSCINP00000035759	Uncharacterized protein.	RRM domain-containing protein.	0.581
F6QMU4_CIOIN	LOC100185985	ENSCINP00000009765	ENSCINP00000025341	Uncharacterized protein.	RNA binding protein fox-1 homolog 3 isoform X8.	0.613
H2XJJ8_CIOIN	F6QMU4_CIOIN	ENSCINP00000029830	ENSCINP00000009765	RRM domain-containing protein.	Uncharacterized protein.	0.571
H2XJJ8_CIOIN	H2XR28_CIOIN	ENSCINP00000029830	ENSCINP00000032112	RRM domain-containing protein.	Uncharacterized protein.	0.527
H2XJJ8_CIOIN	LOC100185985	ENSCINP00000029830	ENSCINP00000025341	RRM domain-containing protein.	RNA binding protein fox-1 homolog 3 isoform X8.	0.865
H2XR28_CIOIN	F6QMU4_CIOIN	ENSCINP00000032112	ENSCINP00000009765	Uncharacterized protein.	Uncharacterized protein.	0.488
H2XR28_CIOIN	H2XJJ8_CIOIN	ENSCINP00000032112	ENSCINP00000029830	Uncharacterized protein.	RRM domain-containing protein.	0.527
H2XR28_CIOIN	H2Y1H5_CIOIN	ENSCINP00000032112	ENSCINP00000035759	Uncharacterized protein.	RRM domain-containing protein.	0.545
H2XR28_CIOIN	LOC100185985	ENSCINP00000032112	ENSCINP00000025341	Uncharacterized protein.	RNA binding protein fox-1 homolog 3 isoform X8.	0.513
H2Y1H5_CIOIN	F6QMU4_CIOIN	ENSCINP00000035759	ENSCINP00000009765	RRM domain-containing protein.	Uncharacterized protein.	0.581
H2Y1H5_CIOIN	H2XR28_CIOIN	ENSCINP00000035759	ENSCINP00000032112	RRM domain-containing protein.	Uncharacterized protein.	0.545
H2Y1H5_CIOIN	LOC100185985	ENSCINP00000035759	ENSCINP00000025341	RRM domain-containing protein.	RNA binding protein fox-1 homolog 3 isoform X8.	0.548
LOC100185985	F6QMU4_CIOIN	ENSCINP00000025341	ENSCINP00000009765	RNA binding protein fox-1 homolog 3 isoform X8.	Uncharacterized protein.	0.613
LOC100185985	H2XJJ8_CIOIN	ENSCINP00000025341	ENSCINP00000029830	RNA binding protein fox-1 homolog 3 isoform X8.	RRM domain-containing protein.	0.865
LOC100185985	H2XR28_CIOIN	ENSCINP00000025341	ENSCINP00000032112	RNA binding protein fox-1 homolog 3 isoform X8.	Uncharacterized protein.	0.513
LOC100185985	H2Y1H5_CIOIN	ENSCINP00000025341	ENSCINP00000035759	RNA binding protein fox-1 homolog 3 isoform X8.	RRM domain-containing protein.	0.548