(24 nodes) Mixed, incl. Sodium Bile acid symporter family, and BLOC complex network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F6V742_CIOIN	Uncharacterized protein. (129 aa)
	LOC100187102	BLOC-1-related complex subunit 6-like. (214 aa)
	F6W0Q4_CIOIN	GDT1 family protein. (253 aa)
	F6WJD2_CIOIN	Uncharacterized protein. (321 aa)
	F7ALJ0_CIOIN	Uncharacterized protein. (284 aa)
	F6V3B4_CIOIN	Uncharacterized protein. (368 aa)
	LOC100184422	Biogenesis of lysosome-related organelles complex 1 subunit 4-like. (175 aa)
	LOC100178266	Uncharacterized protein. (213 aa)
	LOC100186478	Sodium/potassium-transporting ATPase subunit beta-1-interacting protein 3-like. (208 aa)
	F6Y070_CIOIN	Uncharacterized protein. (286 aa)
	F6XIT4_CIOIN	Uncharacterized protein. (273 aa)
	LOC100184617	Uncharacterized protein. (349 aa)
	F6Y2B5_CIOIN	Uncharacterized protein. (316 aa)
	H2XK15_CIOIN	Uncharacterized protein. (139 aa)
	LOC100181388	Uncharacterized protein LOC100181388. (184 aa)
	LOC113474176	kxDL motif-containing protein 1-like. (139 aa)
	H2XQ39_CIOIN	Uncharacterized protein. (189 aa)
	H2XRG9_CIOIN	Uncharacterized protein. (107 aa)
	LOC100183183	Biogenesis of lysosome-related organelles complex 1 subunit 1-like. (127 aa)
	H2XSQ4_CIOIN	PH domain-containing protein. (231 aa)
	H2XUX6_CIOIN	Uncharacterized protein. (280 aa)
	LOC101242531	BLOC-1-related complex subunit 8-like. (124 aa)
	H2Y1E0_CIOIN	Uncharacterized protein. (166 aa)
	LOC100176356	SNARE-associated protein Snapin-like. (133 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6V3B4_CIOIN	LOC100181388	ENSCINP00000012686	ENSCINP00000030985	Uncharacterized protein.	Uncharacterized protein LOC100181388.	0.411
F6V742_CIOIN	F6XIT4_CIOIN	ENSCINP00000000083	ENSCINP00000021696	Uncharacterized protein.	Uncharacterized protein.	0.540
F6V742_CIOIN	H2XK15_CIOIN	ENSCINP00000000083	ENSCINP00000029997	Uncharacterized protein.	Uncharacterized protein.	0.540
F6V742_CIOIN	LOC100176356	ENSCINP00000000083	ENSCINP00000035812	Uncharacterized protein.	SNARE-associated protein Snapin-like.	0.540
F6V742_CIOIN	LOC100181388	ENSCINP00000000083	ENSCINP00000030985	Uncharacterized protein.	Uncharacterized protein LOC100181388.	0.540
F6V742_CIOIN	LOC100183183	ENSCINP00000000083	ENSCINP00000032377	Uncharacterized protein.	Biogenesis of lysosome-related organelles complex 1 subunit 1-like.	0.540
F6V742_CIOIN	LOC100184422	ENSCINP00000000083	ENSCINP00000013041	Uncharacterized protein.	Biogenesis of lysosome-related organelles complex 1 subunit 4-like.	0.540
F6W0Q4_CIOIN	LOC100184617	ENSCINP00000001913	ENSCINP00000021778	GDT1 family protein.	Uncharacterized protein.	0.537
F6WJD2_CIOIN	LOC100181388	ENSCINP00000003667	ENSCINP00000030985	Uncharacterized protein.	Uncharacterized protein LOC100181388.	0.411
F6WJD2_CIOIN	LOC100184617	ENSCINP00000003667	ENSCINP00000021778	Uncharacterized protein.	Uncharacterized protein.	0.535
F6XIT4_CIOIN	F6V742_CIOIN	ENSCINP00000021696	ENSCINP00000000083	Uncharacterized protein.	Uncharacterized protein.	0.540
F6XIT4_CIOIN	H2XK15_CIOIN	ENSCINP00000021696	ENSCINP00000029997	Uncharacterized protein.	Uncharacterized protein.	0.540
F6XIT4_CIOIN	LOC100176356	ENSCINP00000021696	ENSCINP00000035812	Uncharacterized protein.	SNARE-associated protein Snapin-like.	0.545
F6XIT4_CIOIN	LOC100178266	ENSCINP00000021696	ENSCINP00000013519	Uncharacterized protein.	Uncharacterized protein.	0.668
F6XIT4_CIOIN	LOC100181388	ENSCINP00000021696	ENSCINP00000030985	Uncharacterized protein.	Uncharacterized protein LOC100181388.	0.637
F6XIT4_CIOIN	LOC100183183	ENSCINP00000021696	ENSCINP00000032377	Uncharacterized protein.	Biogenesis of lysosome-related organelles complex 1 subunit 1-like.	0.576
F6XIT4_CIOIN	LOC100184422	ENSCINP00000021696	ENSCINP00000013041	Uncharacterized protein.	Biogenesis of lysosome-related organelles complex 1 subunit 4-like.	0.559
F7ALJ0_CIOIN	H2XUX6_CIOIN	ENSCINP00000008688	ENSCINP00000033460	Uncharacterized protein.	Uncharacterized protein.	0.474
H2XK15_CIOIN	F6V742_CIOIN	ENSCINP00000029997	ENSCINP00000000083	Uncharacterized protein.	Uncharacterized protein.	0.540
H2XK15_CIOIN	F6XIT4_CIOIN	ENSCINP00000029997	ENSCINP00000021696	Uncharacterized protein.	Uncharacterized protein.	0.540